Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 93.3 4e-14
>seq3645
Length=87304
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || ||||| || || |||||||| ||
Sbjct 25307 GCCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 25248
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||||||||||||||| || ||| |||||| || |||||||| |||||
Sbjct 25247 TAGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGG 25188
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|||||||| ||||| ||| | || | || | | || | ||||| | | |||||
Sbjct 25187 AATGCCTTCCTTGTC-CTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCA 25129
Query 139716 CCTCAACGGTCACCGTCTTGCCGGT 139740
|||||| ||| | |||||||| ||
Sbjct 25128 CCTCAAGGGTGATGGTCTTGCCAGT 25104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | ||| ||| ||||||||||| ||||| |||| ||| | ||| ||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
| ||| ||||| || |||||| || ||||| || || || || || || ||||| ||
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTC-TTG 25908
Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
| | |||| ||| | | || | ||||| | | || || || | || | ||||||
Sbjct 25907 AATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | || |||||||| ||||||||
Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496039872687200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |