Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3645 93.3 4e-14 >seq3645 Length=87304 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || |||||||| || Sbjct 25307 GCCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 25248 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||||||||| || ||| |||||| || |||||||| ||||| Sbjct 25247 TAGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGG 25188 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| | || | || | | || | ||||| | | ||||| Sbjct 25187 AATGCCTTCCTTGTC-CTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCA 25129 Query 139716 CCTCAACGGTCACCGTCTTGCCGGT 139740 |||||| ||| | |||||||| || Sbjct 25128 CCTCAAGGGTGATGGTCTTGCCAGT 25104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||| ||| ||||||||||| ||||| |||| ||| | ||| || Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| ||||| || |||||| || ||||| || || || || || || ||||| || Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTC-TTG 25908 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | |||| ||| | | || | ||||| | | || || || | || | |||||| Sbjct 25907 AATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || |||||||| |||||||| Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039872687200