Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3190 86.0 8e-12 >seq3190 Length=146739 Score = 86.0 bits (94), Expect = 8e-12 Identities = 203/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 70791 CTTG-TCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 |||| |||| || || || ||||| | || ||||| | || || ||||||||||| | Sbjct 21910 CTTGATCCACGGTGAATTGGATGGGTGCAGAAGCGGCCATGGTTCGGAGATAGTACATCC 21969 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCTA 70908 | || || ||||| || |||| || ||| ||||| || || | || || | | Sbjct 21970 CAGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTCCCCATTG-TT 22028 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || || ||| || || | |||||| || |||||||| || || | || ||| Sbjct 22029 GGGTCCTTTAGGTGGATGTTGAGAGACTGAGACTGGTCGATGAACGCACCGCGATCGGCA 22088 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | || ||||| |||| ||| ||||| | || || || | ||| || Sbjct 22089 GCCATCTGTACAATCGTTCGCTGTGAAATCTCCCAGACTGTCTTGTATAAAGCCTTGATG 22148 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 ||| | || | ||| | ||||||||| || ||||| || ||||| || | ||||| Sbjct 22149 TCTGCAGGTATGTTGGGAATATTCTGAACCGAGCCACCGTCGGCAATGATGCGGTTTTTC 22208 Query 71086 AT 71087 || Sbjct 22209 AT 22210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671106557467160