Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3645 136 9e-27 >seq3645 Length=87304 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 |||||||| | || | ||| || || || | ||||| ||||||||||| || ||||| Sbjct 25819 ATTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCG 25760 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || || || ||||| || || || || || || | |||||| || || Sbjct 25759 GAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGT 25700 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| | || ||||| || | || || | ||| Sbjct 25699 GGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCG 25640 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| ||||| || || || || || || ||||| Sbjct 25639 ACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| ||||| || | |||||||| || ||||| || Sbjct 25276 GTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCGAGCTGTTTGCCG 25217 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| ||||| ||||| || ||||| || ||||||||||| | || Sbjct 25216 GCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTG 25157 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | ||| || || || ||||| || || || ||||| ||||| Sbjct 25156 ACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 25104 Score = 104 bits (114), Expect = 5e-17 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||||||| || || || | || |||||||| || || || || || | ||| | Sbjct 26263 AGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGG 26204 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||||||||| || | | ||| || || || || || || ||| Sbjct 26203 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCT 26144 Query 104462 TTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTG 104519 |||||||||||| ||||| || || || || | || ||| || | || || || | | Sbjct 26143 TTATCCTGAATC-TTGCTCTTGACGTTATCAATTGTGTCG-GAGCTCTCAACTTCCAAGG 26086 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| |||||||| || || ||||| |||||||| Sbjct 26085 TGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151340998831828