Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 136 9e-27
>seq3645
Length=87304
Score = 136 bits (150), Expect = 9e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|||||||| | || | ||| || || || | ||||| ||||||||||| || |||||
Sbjct 25819 ATTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCG 25760
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || || || || || ||||| || || || || || || | |||||| || ||
Sbjct 25759 GAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGT 25700
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||| ||||| | || ||||| || | || || | |||
Sbjct 25699 GGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCG 25640
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| ||||| |||||||| ||||| || || || || || || |||||
Sbjct 25639 ACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 114 bits (126), Expect = 3e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || |||||||| ||||| || | |||||||| || ||||| ||
Sbjct 25276 GTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCGAGCTGTTTGCCG 25217
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| ||||| ||||| || ||||| || ||||||||||| | ||
Sbjct 25216 GCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTG 25157
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || | ||| || || || ||||| || || || ||||| |||||
Sbjct 25156 ACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 25104
Score = 104 bits (114), Expect = 5e-17
Identities = 158/220 (72%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||||||| || || || | || |||||||| || || || || || | ||| |
Sbjct 26263 AGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGG 26204
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| || || || || ||||||||||| || | | ||| || || || || || || |||
Sbjct 26203 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCT 26144
Query 104462 TTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTG 104519
|||||||||||| ||||| || || || || | || ||| || | || || || | |
Sbjct 26143 TTATCCTGAATC-TTGCTCTTGACGTTATCAATTGTGTCG-GAGCTCTCAACTTCCAAGG 26086
Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || ||||| |||||||| || || ||||| ||||||||
Sbjct 26085 TGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151340998831828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |