Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq98 86.0 4e-12 seq3658 84.2 1e-11 >seq98 Length=790089 Score = 86.0 bits (94), Expect = 4e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 25796 ||||||||| ||||| ||| | || |||| | || ||| |||||| || ||||| Sbjct 519942 CAGCTGATCGACCCCTTGCCCAGTATAATCTGTCTTCGCATCCACGTACTCCGCACCGAA 519883 Query 25797 ATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCC 25856 || || ||||||||||||||| || || |||||||| || | || | || || ||| Sbjct 519882 ATGCCGCCACTGGAACCCGTAGACAGGACCTAGGTCGCCCACATCTCGATGAGAAAGGCC 519823 Query 25857 CCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTT 25901 |||| | || || | || |||||| ||||||||||||| Sbjct 519822 GACACTATCAAGGAACTCACGCGAGCCATTGCCGTCCCAGATCTT 519778 >seq3658 Length=116049 Score = 84.2 bits (92), Expect = 1e-11 Identities = 131/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 44367 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 44426 ||||||| |||||| || | || ||| | || |||| |||||||| || |||||| Sbjct 9856 TCGTCAAAGTGAGGATGCGAACGACCAAGATTCCTCAGATCGGCGACAAATTCGCGTCGC 9915 Query 44427 T-CACGGCGCAAAAGGGGAC-ATGCGGAGC-CGTCCTGACCCAGGAGGACATGCCCTTCG 44483 |||||| || || || || || ||| | | | | || || || |||||||||||| Sbjct 9916 GGCACGGC-CAGAAAGGTACTATTGGGATCACTTACCGATCC--GAAGACATGCCCTTCA 9972 Query 44484 ACAAAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 44543 || | || |||||||| || ||||||||||| || |||||| |||| || | |||| Sbjct 9973 CCAGCGAAGGTGTGGTGCCAGATCTCATCATCAATCCGCACGCCATTCCGTCTCGCATGA 10032 Query 44544 C 44544 | Sbjct 10033 C 10033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340121470143543