Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 205 2e-47
>seq3190
Length=146739
Score = 205 bits (226), Expect = 2e-47
Identities = 370/534 (69%), Gaps = 8/534 (1%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | ||||| | | ||| ||||| |||| | |||||| || | ||
Sbjct 23641 TTCACCCACGCCTCCCCAACTCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCG 23582
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | ||||| || || ||| || ||||||| ||||| | ||||
Sbjct 23581 TGCTTCCTCGTTGACATGAAAGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACC 23522
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725
|| ||||| || || |||| || || || ||||| | || || | | || ||
Sbjct 23521 TGCGCTCTGATCTCGAAGACGGCGGGAGGCATTGGGCTGAACATTCATCGTATCCGAGCC 23462
Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785
|| | || ||||| ||||||| || | |||||| ||| | || || ||||| ||
Sbjct 23461 ACCGGGTCGT-ACATTGCCGGCACAAACGGGTCCTCGAACGGGATTGTGCCTATGCTCCG 23403
Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845
||| || |||| || ||||| || |||||||| ||||| ||||| ||| |||||
Sbjct 23402 TGTCTTCAACAACACCGCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTT 23343
Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905
|||||| || || |||||| || |||||| | || |||||| | || | || || ||
Sbjct 23342 TGCTATTTACCTTGAGCCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAA 23283
Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|||||||| |||||| | || || || ||||| |||| || |||||| | || |
Sbjct 23282 TCACGGGAAG-GAGGAAGTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATC 23224
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022
|||||||||||| || ||| | | | | | ||| ||||||| || || |||||
Sbjct 23223 TTTTTATGAAGCGTGTCGAG--AAGAACGGCGAATGGACACTCTTCTGTCCCAACGAAGC 23166
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076
||||||||| | ||||| | || ||||| | || || || || || |||||
Sbjct 23165 TCCAGGTCTGGCTGATGTGTACGGAGACGAATTTGAAGCACTCTATGAGAAGTA 23112
Score = 89.7 bits (98), Expect = 1e-12
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| || |||||||||| | ||| | || | |||| ||||| || | || | ||||
Sbjct 23020 GCTCAAAAGCTATGGTACTCAATCCTCGAGGCCCAGACGGAGACCGGCAACCCTTTTATG 22961
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
|||||||| || | |||||||||||| ||||||| || | ||||| ||||||| | ||
Sbjct 22960 TTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAATCTTGGGACAATTC-GTAG 22902
Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289
| || | || ||||| ||||| || || || || || || ||| || ||||| ||
Sbjct 22901 CTCGAATTTGTGCACCGAAATTATCGAGTATACTGCACCAGATGAGGTAGCAGTATGCAA 22842
Query 364290 CCTTGCGTCGATCGCGCTTCC 364310
| || ||| | || || ||
Sbjct 22841 TTTGGCTTCGCTTGCACTACC 22821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303288623342762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |