Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3190 205 2e-47 >seq3190 Length=146739 Score = 205 bits (226), Expect = 2e-47 Identities = 370/534 (69%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | ||||| | | ||| ||||| |||| | |||||| || | || Sbjct 23641 TTCACCCACGCCTCCCCAACTCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCG 23582 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||| || || ||| || ||||||| ||||| | |||| Sbjct 23581 TGCTTCCTCGTTGACATGAAAGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACC 23522 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || ||||| || || |||| || || || ||||| | || || | | || || Sbjct 23521 TGCGCTCTGATCTCGAAGACGGCGGGAGGCATTGGGCTGAACATTCATCGTATCCGAGCC 23462 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | || ||||| ||||||| || | |||||| ||| | || || ||||| || Sbjct 23461 ACCGGGTCGT-ACATTGCCGGCACAAACGGGTCCTCGAACGGGATTGTGCCTATGCTCCG 23403 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct 23402 TGTCTTCAACAACACCGCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTT 23343 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 |||||| || || |||||| || |||||| | || |||||| | || | || || || Sbjct 23342 TGCTATTTACCTTGAGCCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAA 23283 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||||||| |||||| | || || || ||||| |||| || |||||| | || | Sbjct 23282 TCACGGGAAG-GAGGAAGTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATC 23224 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 |||||||||||| || ||| | | | | | ||| ||||||| || || ||||| Sbjct 23223 TTTTTATGAAGCGTGTCGAG--AAGAACGGCGAATGGACACTCTTCTGTCCCAACGAAGC 23166 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 ||||||||| | ||||| | || ||||| | || || || || || ||||| Sbjct 23165 TCCAGGTCTGGCTGATGTGTACGGAGACGAATTTGAAGCACTCTATGAGAAGTA 23112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || || |||||||||| | ||| | || | |||| ||||| || | || | |||| Sbjct 23020 GCTCAAAAGCTATGGTACTCAATCCTCGAGGCCCAGACGGAGACCGGCAACCCTTTTATG 22961 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||| || | |||||||||||| ||||||| || | ||||| ||||||| | || Sbjct 22960 TTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAATCTTGGGACAATTC-GTAG 22902 Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 | || | || ||||| ||||| || || || || || || ||| || ||||| || Sbjct 22901 CTCGAATTTGTGCACCGAAATTATCGAGTATACTGCACCAGATGAGGTAGCAGTATGCAA 22842 Query 364290 CCTTGCGTCGATCGCGCTTCC 364310 | || ||| | || || || Sbjct 22841 TTTGGCTTCGCTTGCACTACC 22821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303288623342762