Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3645 107 2e-18 seq640 105 6e-18 seq3190 98.7 9e-16 >seq3645 Length=87304 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || || || | || ||||||||||||||||||||| ||| Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | |||||| || ||| |||| || ||||||||||| || ||| Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| | | || ||| | | || | || || | || |||| Sbjct 25924 ATACCCTCCTTGTC-TTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGAC 25866 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || |||||||| || ||||| Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||| ||||| || ||||||||||| ||| Sbjct 25816 CCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAA 25757 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | ||||| || |||||||||||| |||| | |||||| |||||||| ||| Sbjct 25756 AGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGG 25697 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || ||| ||||| | || | || || | || |||| Sbjct 25696 ATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACC 25637 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || ||||| || ||||| Sbjct 25636 TCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | || || |||||||| |||||||| ||| | || ||| Sbjct 25576 CGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCA 25517 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| ||||||||||| || ||||| || || |||||| Sbjct 25516 TCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTG 25457 Query 131140 TC 131141 || Sbjct 25456 TC 25455 >seq640 Length=121632 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | ||||| ||||| | ||||||||||||| ||| Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || || ||||||||||| ||||| ||||| ||||| ||| || ||||| | | Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || ||| | || |||| |||| ||| | ||| ||||| || ||||| || |||| Sbjct 86649 CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGA 86590 Query 131225 A 131225 | Sbjct 86589 A 86589 >seq3190 Length=146739 Score = 98.7 bits (108), Expect = 9e-16 Identities = 476/751 (63%), Gaps = 22/751 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| || || ||||| || |||| ||||||||| |||| | ||| || ||| |||| Sbjct 22260 TTGACAACTTGGAACTCCCCTGCCAGTACACGACGCGAATATATGTTCGAAGTGTAGGGC 22319 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| | || || || ||||||||| ||| | |||||||||||| ||| || Sbjct 22320 TCAAAGCATTCATTGAAACCAAGGATTTGACTGGTACTGGCGGTGGGCATGGGCGCGACA 22379 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || || || || || || || || |||| || || ||||||||| Sbjct 22380 AGCAAGCTGTTCTTCACACCATGTTTGGCGACATCGGCCTTGAGTGTTTGCCAATCCCAA 22439 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 ||| ||| || | ||| ||||||| ||||| || |||||||| | | | || Sbjct 22440 AGCTCAGTAGGAGTGACGCCCCACATATCGTATTGGAAAATGCCTTGGGACACAGGTGAT 22499 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | | || ||| | || | || || | || ||| || || || Sbjct 22500 CCATCATAGCTGGAGTAGCGTCCAGACTCCTTCGCTATCTGGCAGGAGGCTGTCATTGCT 22559 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 ||| |||||| |||||| ||||| | ||||| || | || || || || Sbjct 22560 CCGTGATAAATGGTCTCGAAGATTTGAATATTGAGTTGCTTAGCCTCCGGCGAGTCAAAC 22619 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 || | ||| || | || ||||| || || ||||| | || | ||||||| | | Sbjct 22620 GGAAGGCGAAGTGCGAGGAAGGCATCAGCAAGTCCCTGGACACCAAGAGCGATGGGTCTA 22679 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 ||| | | |||||| | | ||| ||||| || || | ||| |||||| ||||| Sbjct 22680 TGTCTGAAGTTGCTTCGCTTGGCCTCTTCGATTGGGTAGTGGTTAATGTCGATGATTTTG 22739 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC------ 145591 || | ||||| || | || | || | | | ||| |||||||| || Sbjct 22740 TTGAGATTTCGAACGAGGACTTGCACAACCTCGTGTAGCTTCCCAAAGTCATACTCTCCA 22799 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 || | | |||| ||| || | | | || | ||| |||||||| || ||||| Sbjct 22800 CGGGACGCGTCGACG-----TAAGTTGGT-AGTGCAAGCGAAGCCAAATTGCATACTGCT 22853 Query 145652 GTCTCCTCGGCGTCGCTGTAT--TGTACGATCTCGGCGCACAAATT---GCTACATTTGA 145706 ||| || | || || |||| | | || |||| ||||||||| ||||| | Sbjct 22854 ACCTCATCTG-GT-GCAGTATACTCGATAATTTCGGTGCACAAATTCGAGCTAC---GAA 22908 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766 | || || ||||| | ||| || || || | |||||| ||||||||||| | ||| | | Sbjct 22909 TTGTCCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCCTTGTACAACATAAAAG 22968 Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 | ||| |||||| ||| | ||| | ||| Sbjct 22969 GGTTGCCGGTCTCCGTCTGGGCCTCGAGGAT 22999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471989842477440