Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 107 2e-18
seq640 105 6e-18
seq3190 98.7 9e-16
>seq3645
Length=87304
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || || || || || | || ||||||||||||||||||||| |||
Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| | |||||| || ||| |||| || ||||||||||| || |||
Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| ||| | | || ||| | | || | || || | || ||||
Sbjct 25924 ATACCCTCCTTGTC-TTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGAC 25866
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || || || || || |||||||| || |||||
Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || | || | ||| ||||| || ||||||||||| |||
Sbjct 25816 CCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAA 25757
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | | ||||| || |||||||||||| |||| | |||||| |||||||| |||
Sbjct 25756 AGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGG 25697
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || || ||| ||||| | || | || || | || ||||
Sbjct 25696 ATACCTTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACC 25637
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | || || || || || || || ||||| || |||||
Sbjct 25636 TCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| ||||| | || | || || |||||||| |||||||| ||| | || |||
Sbjct 25576 CGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCA 25517
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
||||| |||||||| || ||| |||| ||||||||||| || ||||| || || ||||||
Sbjct 25516 TCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTG 25457
Query 131140 TC 131141
||
Sbjct 25456 TC 25455
>seq640
Length=121632
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | ||||| ||||| | ||||||||||||| |||
Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || || ||||||||||| ||||| ||||| ||||| ||| || ||||| | |
Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || ||| | || |||| |||| ||| | ||| ||||| || ||||| || ||||
Sbjct 86649 CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGA 86590
Query 131225 A 131225
|
Sbjct 86589 A 86589
>seq3190
Length=146739
Score = 98.7 bits (108), Expect = 9e-16
Identities = 476/751 (63%), Gaps = 22/751 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| || || ||||| || |||| ||||||||| |||| | ||| || ||| ||||
Sbjct 22260 TTGACAACTTGGAACTCCCCTGCCAGTACACGACGCGAATATATGTTCGAAGTGTAGGGC 22319
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
||||| | || || || ||||||||| ||| | |||||||||||| ||| ||
Sbjct 22320 TCAAAGCATTCATTGAAACCAAGGATTTGACTGGTACTGGCGGTGGGCATGGGCGCGACA 22379
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || || || || || || || || |||| || || |||||||||
Sbjct 22380 AGCAAGCTGTTCTTCACACCATGTTTGGCGACATCGGCCTTGAGTGTTTGCCAATCCCAA 22439
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
||| ||| || | ||| ||||||| ||||| || |||||||| | | | ||
Sbjct 22440 AGCTCAGTAGGAGTGACGCCCCACATATCGTATTGGAAAATGCCTTGGGACACAGGTGAT 22499
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357
|| | | || ||| | || | || || | || ||| || || ||
Sbjct 22500 CCATCATAGCTGGAGTAGCGTCCAGACTCCTTCGCTATCTGGCAGGAGGCTGTCATTGCT 22559
Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417
||| |||||| |||||| ||||| | ||||| || | || || || ||
Sbjct 22560 CCGTGATAAATGGTCTCGAAGATTTGAATATTGAGTTGCTTAGCCTCCGGCGAGTCAAAC 22619
Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477
|| | ||| || | || ||||| || || ||||| | || | ||||||| | |
Sbjct 22620 GGAAGGCGAAGTGCGAGGAAGGCATCAGCAAGTCCCTGGACACCAAGAGCGATGGGTCTA 22679
Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537
||| | | |||||| | | ||| ||||| || || | ||| |||||| |||||
Sbjct 22680 TGTCTGAAGTTGCTTCGCTTGGCCTCTTCGATTGGGTAGTGGTTAATGTCGATGATTTTG 22739
Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC------ 145591
|| | ||||| || | || | || | | | ||| |||||||| ||
Sbjct 22740 TTGAGATTTCGAACGAGGACTTGCACAACCTCGTGTAGCTTCCCAAAGTCATACTCTCCA 22799
Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651
|| | | |||| ||| || | | | || | ||| |||||||| || |||||
Sbjct 22800 CGGGACGCGTCGACG-----TAAGTTGGT-AGTGCAAGCGAAGCCAAATTGCATACTGCT 22853
Query 145652 GTCTCCTCGGCGTCGCTGTAT--TGTACGATCTCGGCGCACAAATT---GCTACATTTGA 145706
||| || | || || |||| | | || |||| ||||||||| ||||| |
Sbjct 22854 ACCTCATCTG-GT-GCAGTATACTCGATAATTTCGGTGCACAAATTCGAGCTAC---GAA 22908
Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766
| || || ||||| | ||| || || || | |||||| ||||||||||| | ||| | |
Sbjct 22909 TTGTCCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCCTTGTACAACATAAAAG 22968
Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797
| ||| |||||| ||| | ||| | |||
Sbjct 22969 GGTTGCCGGTCTCCGTCTGGGCCTCGAGGAT 22999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471989842477440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |