Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3851 140 2e-28 seq2180 140 2e-28 seq1121 140 2e-28 seq723 140 2e-28 seq660 140 2e-28 seq271 140 2e-28 seq13 140 2e-28 seq3044 138 8e-28 seq1916 114 9e-21 seq3211 113 3e-20 seq1714 113 3e-20 seq1098 111 1e-19 seq3891 105 4e-18 seq365 100 2e-16 >seq3851 Length=2819 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2048 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2107 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2108 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2142 >seq2180 Length=1518 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 414 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 473 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 474 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 508 >seq1121 Length=10576 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1673 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1614 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1613 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1579 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9939 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9880 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9879 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9845 >seq723 Length=856 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 242 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 183 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 182 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 148 >seq660 Length=6764 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6130 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6071 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6070 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6036 >seq271 Length=673 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 293 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 352 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 353 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 387 >seq13 Length=17595 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15985 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15926 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15925 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15891 >seq3044 Length=10133 Score = 138 bits (152), Expect = 8e-28 Identities = 87/94 (93%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2464 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2523 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 |||||| ||||||||||||||||||||||||||| Sbjct 2524 TAATCCATTCATGCGCGTCACTAATTAGATGACG 2557 >seq1916 Length=9001 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||| |||| |||||||||||||||||| || |||||| | Sbjct 6913 AAGCCCCTTCCCTTGGCTGTAGTTTTGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 6854 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||| | |||||||||||||||||||||||||| Sbjct 6853 TAATACATTCATGCGCGTCACTAATTAGATGAC 6821 >seq3211 Length=3972 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||| ||||||||||| | |||||| | Sbjct 1315 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGACAGTAGATAGGGACAGTGAGAATCTCAT 1256 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| ||||||||||| |||||||| Sbjct 1255 TAATCCATTCATGCACGTCACTAATTTGATGACGA 1221 >seq1714 Length=35392 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||| ||||||||||| | |||||| | Sbjct 33377 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGACAGTAGATAGGGACAGTGAGAATCTCAT 33318 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| ||||||||||| |||||||| Sbjct 33317 TAATCCATTCATGCACGTCACTAATTTGATGACGA 33283 >seq1098 Length=7529 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957 ||||||||||||||||||||||||| |||||| ||||||||| | | |||||| || Sbjct 4823 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGACAGTAGATAGGACAGTGAGAATCTCATT 4764 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||| ||||||||||| |||||||| Sbjct 4763 AATCCATTCATGCACGTCACTAATTTGATGACGA 4730 >seq3891 Length=20417 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||| ||||||||||||| || ||||| || Sbjct 17724 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTACATAGTAGATAGGGACAGTGGGAATCTTGT 17665 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||| | | | |||||||||||||| Sbjct 17664 TAATCCATTCATACACATTACTAATTAGATGAC 17632 >seq365 Length=35519 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| |||| |||||||| ||| ||||| || ||||| || Sbjct 33110 AAGCCCGTTCCCTTGGCTGTAGTTTTGCTAGATAATAGGTAGGGACAGTGGGAATCTTGT 33051 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||| || | ||||||||||||||||| || Sbjct 33050 TAATCATTTAATACACGTCACTAATTAGATGATGA 33016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931316280421