Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3851 140 2e-28
seq2180 140 2e-28
seq1121 140 2e-28
seq723 140 2e-28
seq660 140 2e-28
seq271 140 2e-28
seq13 140 2e-28
seq3044 138 8e-28
seq1916 114 9e-21
seq3211 113 3e-20
seq1714 113 3e-20
seq1098 111 1e-19
seq3891 105 4e-18
seq365 100 2e-16
>seq3851
Length=2819
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2048 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2107
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2108 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2142
>seq2180
Length=1518
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 414 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 473
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 474 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 508
>seq1121
Length=10576
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1673 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1614
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1613 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1579
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 9939 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9880
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 9879 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9845
>seq723
Length=856
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 242 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 183
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 182 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 148
>seq660
Length=6764
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6130 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6071
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6070 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6036
>seq271
Length=673
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 293 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 352
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 353 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 387
>seq13
Length=17595
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 15985 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15926
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 15925 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15891
>seq3044
Length=10133
Score = 138 bits (152), Expect = 8e-28
Identities = 87/94 (93%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2464 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2523
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
|||||| |||||||||||||||||||||||||||
Sbjct 2524 TAATCCATTCATGCGCGTCACTAATTAGATGACG 2557
>seq1916
Length=9001
Score = 114 bits (126), Expect = 9e-21
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||| |||| |||||||||||||||||| || |||||| |
Sbjct 6913 AAGCCCCTTCCCTTGGCTGTAGTTTTGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 6854
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||| | ||||||||||||||||||||||||||
Sbjct 6853 TAATACATTCATGCGCGTCACTAATTAGATGAC 6821
>seq3211
Length=3972
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||| |||||| ||||||||||| | |||||| |
Sbjct 1315 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGACAGTAGATAGGGACAGTGAGAATCTCAT 1256
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||| ||||||||||| ||||||||
Sbjct 1255 TAATCCATTCATGCACGTCACTAATTTGATGACGA 1221
>seq1714
Length=35392
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||| |||||| ||||||||||| | |||||| |
Sbjct 33377 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGACAGTAGATAGGGACAGTGAGAATCTCAT 33318
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||| ||||||||||| ||||||||
Sbjct 33317 TAATCCATTCATGCACGTCACTAATTTGATGACGA 33283
>seq1098
Length=7529
Score = 111 bits (122), Expect = 1e-19
Identities = 81/94 (86%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957
||||||||||||||||||||||||| |||||| ||||||||| | | |||||| ||
Sbjct 4823 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGACAGTAGATAGGACAGTGAGAATCTCATT 4764
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| ||||||| ||||||||||| ||||||||
Sbjct 4763 AATCCATTCATGCACGTCACTAATTTGATGACGA 4730
>seq3891
Length=20417
Score = 105 bits (116), Expect = 4e-18
Identities = 79/93 (85%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||| |||| ||||||||||||| || ||||| ||
Sbjct 17724 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTACATAGTAGATAGGGACAGTGGGAATCTTGT 17665
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| ||||| | | | ||||||||||||||
Sbjct 17664 TAATCCATTCATACACATTACTAATTAGATGAC 17632
>seq365
Length=35519
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||| |||| |||||||| ||| ||||| || ||||| ||
Sbjct 33110 AAGCCCGTTCCCTTGGCTGTAGTTTTGCTAGATAATAGGTAGGGACAGTGGGAATCTTGT 33051
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| ||| || | ||||||||||||||||| ||
Sbjct 33050 TAATCATTTAATACACGTCACTAATTAGATGATGA 33016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334931316280421
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |