Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 156 5e-33
>seq3190
Length=146739
Score = 156 bits (172), Expect = 5e-33
Identities = 587/907 (65%), Gaps = 24/907 (3%)
Strand=Plus/Plus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
||| || |||||||| | |||| |||| || ||| ||| | ||||| | | |
Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| || |||| | || || || |||||||| ||||| || |||||||||| | ||
Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
|||||| | | | |||||| || || |||||| | || | ||| | |
Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
| ||| | ||||| || || | ||| || || | | || ||||| ||||| || ||
Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
|| || | ||||| |||||||| || | || | | ||| || | ||| || || ||
Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428
Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351
| || || || || | || || || |||| || ||| | ||| || ||
Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488
Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411
|| || || ||| | || ||||| | ||||| || || || || ||||| || ||
Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548
Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471
|| || || || |||||| || || || || | || || | | ||| ||
Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608
Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531
|| || || | || || || ||||| || || |||||| ||| | ||||| || ||
Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668
Query 63532 CTCAAT-AGCT----GA-GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
||||| | || || ||| || |||| |||| || || |||||||||||||
Sbjct 23669 CTCAAGGACCTTCTCGACGTC-ATCTCCCCA-GATG----CCAACAGCGACACGCATTAT 23722
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| ||||| || ||| ||| |||| || | | || || || || |
Sbjct 23723 CATGTGTTGAGGCCTCTCAGCGACCTTGCCGTCGAGACGAAGCAGATAAGACCGCTCGAG 23782
Query 63646 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703
||| || ||||| || || | ||| ||||| ||||| || || | || | || |||
Sbjct 23783 AGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCTCGATCATAGACGATGGCAGAATTG 23840
Query 63704 AGTTTATCCTTATATTTGT-TAACTACA-TC-CATGGTAATACTT-GAAATAATAGGAAA 63759
| | ||| | ||| | | |||| || | || | || || || |||||
Sbjct 23841 AACT----CTTCTGCGTGTCTCATTACAGTCTCGTGTGTTTGCTGCGATATCATAGGTGC 23896
Query 63760 ATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63819
| || ||||| |||||||| |||| ||||| ||| | ||| | ||| |
Sbjct 23897 CGGCCTCTTGTTTTTGGGATTGACGTAGTGGAATAGATCTGAGACTACTGCCGAAAACTG 23956
Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879
||| || |||| ||| |||||||||||||| ||||| | ||| || ||||||||||||||
Sbjct 23957 TTTCTTCGTTTGTTTATGTAGATTTGATACAGCTATACGAGCCGCGAGAATGGCATAATC 24016
Query 63880 CGGATGT 63886
|| |||
Sbjct 24017 GGGGTGT 24023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633601181723600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |