Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3190 156 5e-33 >seq3190 Length=146739 Score = 156 bits (172), Expect = 5e-33 Identities = 587/907 (65%), Gaps = 24/907 (3%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || |||||||| | |||| |||| || ||| ||| | ||||| | | | Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || |||| | || || || |||||||| ||||| || |||||||||| | || Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 |||||| | | | |||||| || || |||||| | || | ||| | | Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| | ||||| || || | ||| || || | | || ||||| ||||| || || Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | ||||| |||||||| || | || | | ||| || | ||| || || || Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 | || || || || | || || || |||| || ||| | ||| || || Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || ||| | || ||||| | ||||| || || || || ||||| || || Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || || || || |||||| || || || || | || || | | ||| || Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 || || || | || || || ||||| || || |||||| ||| | ||||| || || Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668 Query 63532 CTCAAT-AGCT----GA-GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||||| | || || ||| || |||| |||| || || ||||||||||||| Sbjct 23669 CTCAAGGACCTTCTCGACGTC-ATCTCCCCA-GATG----CCAACAGCGACACGCATTAT 23722 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| || ||| ||| |||| || | | || || || || | Sbjct 23723 CATGTGTTGAGGCCTCTCAGCGACCTTGCCGTCGAGACGAAGCAGATAAGACCGCTCGAG 23782 Query 63646 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703 ||| || ||||| || || | ||| ||||| ||||| || || | || | || ||| Sbjct 23783 AGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCTCGATCATAGACGATGGCAGAATTG 23840 Query 63704 AGTTTATCCTTATATTTGT-TAACTACA-TC-CATGGTAATACTT-GAAATAATAGGAAA 63759 | | ||| | ||| | | |||| || | || | || || || ||||| Sbjct 23841 AACT----CTTCTGCGTGTCTCATTACAGTCTCGTGTGTTTGCTGCGATATCATAGGTGC 23896 Query 63760 ATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63819 | || ||||| |||||||| |||| ||||| ||| | ||| | ||| | Sbjct 23897 CGGCCTCTTGTTTTTGGGATTGACGTAGTGGAATAGATCTGAGACTACTGCCGAAAACTG 23956 Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || |||| ||| |||||||||||||| ||||| | ||| || |||||||||||||| Sbjct 23957 TTTCTTCGTTTGTTTATGTAGATTTGATACAGCTATACGAGCCGCGAGAATGGCATAATC 24016 Query 63880 CGGATGT 63886 || ||| Sbjct 24017 GGGGTGT 24023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633601181723600