Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1688 176 9e-39 seq3190 138 2e-27 seq1258 93.3 8e-14 >seq1688 Length=109735 Score = 176 bits (194), Expect = 9e-39 Identities = 358/522 (69%), Gaps = 21/522 (4%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || |||||| ||||| || |||||||| |||| |||||| | || | || | | || Sbjct 95175 CCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCA-AGACAAGAACTCTAC 95233 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | || || ||||| | || || ||||| || |||||| || |||| Sbjct 95234 CTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTT 95293 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACG 42810 || || || |||||||| ||| || || ||| ||||| || || ||||||||||||| Sbjct 95294 TGCATCAATTTTCTGGCTTAAGAAGCGGG-GTCTTATGCCGGGCCTGACCTTCTCGAACG 95352 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||| ||| | || |||||||| || | ||||||||||||||||| ||||| || Sbjct 95353 AACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGCCTGCCTCCTCTTCTC---CC 95409 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 | || | || ||| | ||| || || | || | | ||||| ||||| || | Sbjct 95410 ATCTAAACAACCGTCCCACCAAGCAGGCTGTTCAGGACGTTATCACTGAGGCTGTCACTA 95469 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACC 42990 ||||| | ||||| || ||| || | ||||| | ||| | || |||||| || Sbjct 95470 TCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTT 95529 Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 | ||| |||| || ||| | | || ||||| | ||| || || | | ||| || Sbjct 95530 TGATGAAGCAA-TATATCGAATTTGTGGCCGATCGTCTTCT---CC---TAGCTCTAGGC 95582 Query 43050 CGCC------TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || ||||||| || || ||| |||||||| |||||| || || |||| Sbjct 95583 AACCAGAAGTACTACAACTCGTCGAACCCGTTCGACTTCATGGAGTCGATATCATTGGCT 95642 Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| ||||||||||| || | ||||| ||| Sbjct 95643 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAG 95684 >seq3190 Length=146739 Score = 138 bits (152), Expect = 2e-27 Identities = 317/472 (67%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 || || | ||| |||| |||||| | || ||| | || ||| || || |||||| || Sbjct 23175 GGACAGAAGAGTGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTC 23234 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAG 245088 || || ||| ||| || || | | | || ||| || ||| ||||| | || Sbjct 23235 CAAAGAGCCAAGAATAGATCGCGCGCGCGGACTTCCTCCTTCCC-GTGATTCTTGCGCAA 23293 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 |||||||| || ||||| ||| ||||||| ||||| | ||| | ||| | || || || Sbjct 23294 GTCCAAAAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGG 23353 Query 245149 CCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGG 245208 ||||||||| || || ||||| || ||| || |||||||| || || |||| Sbjct 23354 CCGCTTGTTACCACCTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGG 23413 Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTT 245268 ||| || ||||| ||| ||||| ||||| ||||| | || || | | || Sbjct 23414 CACAATCCCGTTCGAGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGA-TAC 23472 Query 245269 GCTG-ATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 | || ||| || || | || || || ||| ||||| || |||||| |||| | || Sbjct 23473 GATGAATGTTCAGCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGG 23532 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 |||| || || || ||||||||| ||||||| | || ||||| || | || || Sbjct 23533 TGTCGTAGATACCTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACT 23592 Query 245388 GGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | || | || | | | |||||| ||||| ||| ||||||||| || || Sbjct 23593 GTGGTTGTGGAGTACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATA 23644 >seq1258 Length=224305 Score = 93.3 bits (102), Expect = 8e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||||||||||| ||| || | | |||| ||| ||||||||||| ||||| ||||| Sbjct 143944 CATCTTCTGGCTGAAGAAGCGTGGCTTCATGCACGGCCTCACCTTCTCCAACGAGCTCAT 143885 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 |||||| || ||||| || || | |||||||| ||||| |||| |||| Sbjct 143884 CAGCAGAGATGAGGGACTCCACACAGACTTTGCATGCCTGCTGTACTCG 143836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944293269702160