Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 176 9e-39
seq3190 138 2e-27
seq1258 93.3 8e-14
>seq1688
Length=109735
Score = 176 bits (194), Expect = 9e-39
Identities = 358/522 (69%), Gaps = 21/522 (4%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| |||||| ||||| || |||||||| |||| |||||| | || | || | | ||
Sbjct 95175 CCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCA-AGACAAGAACTCTAC 95233
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| | | || || ||||| | || || ||||| || |||||| || ||||
Sbjct 95234 CTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTT 95293
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACG 42810
|| || || |||||||| ||| || || ||| ||||| || || |||||||||||||
Sbjct 95294 TGCATCAATTTTCTGGCTTAAGAAGCGGG-GTCTTATGCCGGGCCTGACCTTCTCGAACG 95352
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
|||| ||| | || |||||||| || | ||||||||||||||||| ||||| ||
Sbjct 95353 AACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGCCTGCCTCCTCTTCTC---CC 95409
Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930
| || | || ||| | ||| || || | || | | ||||| ||||| || |
Sbjct 95410 ATCTAAACAACCGTCCCACCAAGCAGGCTGTTCAGGACGTTATCACTGAGGCTGTCACTA 95469
Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACC 42990
||||| | ||||| || ||| || | ||||| | ||| | || |||||| ||
Sbjct 95470 TCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTT 95529
Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049
| ||| |||| || ||| | | || ||||| | ||| || || | | ||| ||
Sbjct 95530 TGATGAAGCAA-TATATCGAATTTGTGGCCGATCGTCTTCT---CC---TAGCTCTAGGC 95582
Query 43050 CGCC------TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
|| ||||||| || || ||| |||||||| |||||| || || ||||
Sbjct 95583 AACCAGAAGTACTACAACTCGTCGAACCCGTTCGACTTCATGGAGTCGATATCATTGGCT 95642
Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||||| ||||||||||| || | ||||| |||
Sbjct 95643 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAG 95684
>seq3190
Length=146739
Score = 138 bits (152), Expect = 2e-27
Identities = 317/472 (67%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029
|| || | ||| |||| |||||| | || ||| | || ||| || || |||||| ||
Sbjct 23175 GGACAGAAGAGTGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTC 23234
Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAG 245088
|| || ||| ||| || || | | | || ||| || ||| ||||| | ||
Sbjct 23235 CAAAGAGCCAAGAATAGATCGCGCGCGCGGACTTCCTCCTTCCC-GTGATTCTTGCGCAA 23293
Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148
|||||||| || ||||| ||| ||||||| ||||| | ||| | ||| | || || ||
Sbjct 23294 GTCCAAAAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGG 23353
Query 245149 CCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGG 245208
||||||||| || || ||||| || ||| || |||||||| || || ||||
Sbjct 23354 CCGCTTGTTACCACCTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGG 23413
Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTT 245268
||| || ||||| ||| ||||| ||||| ||||| | || || | | ||
Sbjct 23414 CACAATCCCGTTCGAGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGA-TAC 23472
Query 245269 GCTG-ATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327
| || ||| || || | || || || ||| ||||| || |||||| |||| | ||
Sbjct 23473 GATGAATGTTCAGCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGG 23532
Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387
|||| || || || ||||||||| ||||||| | || ||||| || | || ||
Sbjct 23533 TGTCGTAGATACCTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACT 23592
Query 245388 GGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
| || | || | | | |||||| ||||| ||| ||||||||| || ||
Sbjct 23593 GTGGTTGTGGAGTACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATA 23644
>seq1258
Length=224305
Score = 93.3 bits (102), Expect = 8e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817
|||||||||||| ||| || | | |||| ||| ||||||||||| ||||| |||||
Sbjct 143944 CATCTTCTGGCTGAAGAAGCGTGGCTTCATGCACGGCCTCACCTTCTCCAACGAGCTCAT 143885
Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866
|||||| || ||||| || || | |||||||| ||||| |||| ||||
Sbjct 143884 CAGCAGAGATGAGGGACTCCACACAGACTTTGCATGCCTGCTGTACTCG 143836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944293269702160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |