Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3645 105 5e-18 >seq3645 Length=87304 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | |||||| || |||| || | |||||||||||| |||||||||||||| Sbjct 26045 ACCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACT 25986 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || |||| ||||| ||||| || || || |||| |||||||| || || Sbjct 25985 CAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGG 25926 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGC 34078 | | ||| ||||| ||| ||| ||||| | ||| | | || | |||||| Sbjct 25925 GATACCCTCCTTGTCTTGAATCTTTGACTTAA-CGTTGTCAATCGTGTCTGATGATTCGA 25867 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | |||||| || ||||| || || || || || |||||||||||| Sbjct 25866 CTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397043570680582