Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3190 154 2e-32 seq1688 120 4e-22 seq842 86.0 7e-12 >seq3190 Length=146739 Score = 154 bits (170), Expect = 2e-32 Identities = 372/559 (67%), Gaps = 7/559 (1%) Strand=Plus/Plus Query 114707 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 114766 ||||| |||||||| || || || | || | || ||||| || | | || ||| Sbjct 23121 TAGAGTGCTTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAG 23180 Query 114767 AAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGA 114826 ||||| | ||||| || || ||| ||||||||||| || || || ||| |||| ||| Sbjct 23181 AAGAGTGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGA 23240 Query 114827 GCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 114886 || |||| ||||| || ||| |||| || | ||| ||||| ||||| |||||| Sbjct 23241 GCCAAGAATAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAA 23300 Query 114887 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGAC-- 114944 || || | || ||| |||||||| || || ||||| | || | | | ||| | | Sbjct 23301 AACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACG-CACCTGGCCGCTT 23359 Query 114945 --GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002 |||| | |||| ||||| ||||| ||| || || || || ||||| || | || Sbjct 23360 GTTACCACCTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAAT 23419 Query 115003 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGAT 115062 || | || || ||||| || ||| ||| |||||| || | ||| || Sbjct 23420 CCCGTTCGAGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAAT 23479 Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122 || || ||||| || || ||| ||| ||||| | ||||| | | | || |||| Sbjct 23480 GTTCAGCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTA 23539 Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT 115182 ||| || || || ||| | || | | | |||||||| | || ||||| Sbjct 23540 GATACCTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTG 23599 Query 115183 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACATCT 115241 ||| ||||||||||||||||| ||||| | |||||| |||| ||| ||| ||||| Sbjct 23600 TGGAGTACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAA-ATATTTTTGAGACATAA 23658 Query 115242 TATCGTAGGTCTCCAAGAC 115260 || |||||||| | ||| Sbjct 23659 GATTATAGGTCTCAAGGAC 23677 >seq1688 Length=109735 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || ||||| || || ||||| ||||| ||||||||| ||| || Sbjct 95393 GGCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCC 95334 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| |||||||||||||| | ||||||||| | ||| ||||| |||||| || Sbjct 95333 CGGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGCTGAAGAAAAT 95274 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||||||||| ||||| |||| ||| || | ||| |||| Sbjct 95273 ACCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGG 95233 >seq842 Length=73752 Score = 86.0 bits (94), Expect = 7e-12 Identities = 242/366 (66%), Gaps = 13/366 (4%) Strand=Plus/Plus Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG-CTCGGAAACAT 172694 |||||||| |||| ||||||||| ||||| | | ||||| || || ||| | || Sbjct 25002 ACCATCGTGATCCTGATCCGTCATGATCATGATGTGCCCATAACGGAGACTCTTGCA-AT 25060 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | || || ||| | || | ||| || | || |||||||| | | | ||| || Sbjct 25061 CCTGGTAGTCCGTCTTGTGCTTAAGCCCTATGAACTTCTTGATGTTCTGTATCTCCGCGT 25120 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 || | || ||| | ||||| || || |||||||| | ||| ||||| || |||| Sbjct 25121 TTTTCGAGATTTGGTCGACTGAGGCGTCTCGGACATTGAGAAGCTTACCACGAAGGGGGA 25180 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | || ||| | ||||| | ||||| || || | ||||| | ||| | ||| || | Sbjct 25181 AAACGCCGAAAAGATCAGGCCCAACGACTGAGCGCCCAGCCATTGCCAAACCCTTGGCCG 25240 Query 172875 AATCACCCTCCGTCACGATGAGCGTACACTT---TCCAGATTGTGCCGTCCCCGCCTTGT 172931 |||| || ||||||| ||| | |||||| | ||| | || | || || |||| Sbjct 25241 AATCTCCTTCCGTCAAGATCAACGTACATTGGTATCCGTCCTTTG---TGCCAGCTTTGT 25297 Query 172932 TCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTG-CGGGCACCATCTGTCTTC 172990 | |||||| || |||||| | || ||||| | | || |||||| ||||| Sbjct 25298 TAGCATCGGTCAGCTTGGGGTT----GTCCATTTGGCTTCGACGATTACCATCGCTCTTC 25353 Query 172991 TTGAGT 172996 |||||| Sbjct 25354 TTGAGT 25359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597324546214280