Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 152 6e-32
seq640 91.5 2e-13
>seq3645
Length=87304
Score = 152 bits (168), Expect = 6e-32
Identities = 162/211 (77%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| ||||| ||||||||||||||||| ||||||||| ||| ||||| |||| ||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| ||||||||| ||||| || | ||||||||||| | ||| | | |||||||| | ||
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGT-CTTG 25908
Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | |||| | | ||| | | | |||||| ||||| || || | ||| || || ||
Sbjct 25907 AATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
||||| || |||||||| ||||||||||||
Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || ||||| ||||| || | || |||| | | || || || ||||| || |||||
Sbjct 25781 CTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAA 25722
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||| ||||| | ||| | | ||||| ||| || || |||| |
Sbjct 25721 GATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATT 25662
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| |||||| || |||| ||||| || ||||| || |||||||| ||
Sbjct 25661 GTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGAC 25602
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 25601 GAAGATTTGCAT 25590
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| |||| |||||||| || || || |||||||| | || |||||| | || ||
Sbjct 26255 CACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTC 26196
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| ||||| || || | ||||||||||| | ||| | | ||| || ||| |
Sbjct 26195 CAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCC-T 26137
Query 42119 GATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174
|| | || | |||| | | | ||||| |||| || || || | ||||| |
Sbjct 26136 GAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTC---TCAACTTCCAAGGTGATCG 26080
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || || ||||| |||||||| |||||
Sbjct 26079 TCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
>seq640
Length=121632
Score = 91.5 bits (100), Expect = 2e-13
Identities = 136/192 (71%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | || || || | || || | |||||| || ||||| |
Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | || |||||||| | ||| | || ||||||||| ||| || |||| |
Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||||||||||| || |||| |||||||| || ||||| || ||||| || |
Sbjct 86649 CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGA 86590
Query 42199 AGAT-TTGCATT 42209
|| | ||| |||
Sbjct 86589 AGCTGTTGGATT 86578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543186379487440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |