Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3645 89.7 5e-13 seq1435 86.0 6e-12 >seq3645 Length=87304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||||| || || | || ||||| ||||| |||||||| || | Sbjct 25589 ACCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 25530 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || ||| | || ||||||||||| ||||| | || | |||||||| || ||||| Sbjct 25529 GAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 25470 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||||| || || || || Sbjct 25469 AATGCCCTCTTTGTCCTGGATCTT 25446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||| || | || | ||| || ||||||||||||||||| Sbjct 26045 ACCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACT 25986 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || | |||||| || || | || | |||||||||||| || || Sbjct 25985 CAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGG 25926 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || ||| ||| || || | || || | || || Sbjct 25925 GATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGAC 25866 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | |||| ||||| || || | || |||||||| ||||||||| Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 >seq1435 Length=581194 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | || || || || || || ||||| || | | Sbjct 375885 CCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 375944 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| || ||||||||||| | ||||| ||||| ||||| || || Sbjct 375945 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGG 376004 Query 64337 ATTCCTTCTTTTTCT 64351 || ||||| || ||| Sbjct 376005 ATGCCTTCCTTGTCT 376019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499620498526040