Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3190 147 2e-30 >seq3190 Length=146739 Score = 147 bits (162), Expect = 2e-30 Identities = 328/488 (67%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT- 93950 ||| |||| || || |||||||| || || || |||||| || | ||||| ||||| Sbjct 23632 GCCTCCCCAACTCTCTTCAACGCTGGTACTCCACAACCACAGTTGGCATCGTGCTTCCTC 23573 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | |||| | || | ||| ||| || || | ||||| | | ||| ||| || Sbjct 23572 GTTGAC-ATGAAAGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACCTGCGCTCT 23514 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGT 94068 ||||| || ||||| || || ||| | | | || |||| || |||| || Sbjct 23513 GATCTCGAAGACGGCGGGAGGCATTGGGCTGAACATTCAT--CGTATCCGAGCCACCGGG 23456 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 || ||||| ||| || || || |||| ||||| | || ||||||||||| |||||| Sbjct 23455 TCGTACATTGCCGGCACAAACGGGTCCTCGAACGGGATTGTGCCTATGCTCCGTGTCTTC 23396 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 |||||| | ||| | || || ||||| |||||| | | || ||| | || || | Sbjct 23395 AACAACACCGCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTTTGCTATT 23336 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || || ||||| |||||||| || || | || | ||| |||| ||||| ||||| Sbjct 23335 TACCTTGAGCCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGG 23276 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || | | || | || || |||| ||||| ||| || || ||||||||| Sbjct 23275 AAGGAGGAAGTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATG 23216 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || |||||||| ||| || |||| || || |||||||| ||| ||| || ||| Sbjct 23215 AAGCGTGTCGAGAAGAACGGCGAATGGACACTCTTCTGTCCCAACGAAGCTCCAGGTCTG 23156 Query 94369 TCCGACGT 94376 | || || Sbjct 23155 GCTGATGT 23148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494699137900360