Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1688 104 2e-17 seq3645 87.8 2e-12 >seq1688 Length=109735 Score = 104 bits (114), Expect = 2e-17 Identities = 347/527 (66%), Gaps = 25/527 (5%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | || || || || | ||||| || || |||||| | | | | | | Sbjct 95172 GTTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTCT 95231 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC--CGGCA 52443 || | || | ||| | || |||||||| || ||||| | |||| ||| ||| Sbjct 95232 ACCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGG--TATTTTCTTCAGCGGTT 95289 Query 52444 GCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 |||||| | || || | |||| | | || | ||||| |||||||| ||| | Sbjct 95290 CCTTTGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGA 95349 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563 |||| | || || ||||| || || || ||||| |||||||| |||||| || | Sbjct 95350 ACGAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGCCTGCCTCCTCTTCT--- 95406 Query 52564 CGCGCGTGACCGAAAAATTGGATTCGGACACG-ATCCTG---AGCATGTT--CAAGGAGG 52617 | | | | ||| | | | | || | | ||| || | ||| || |||| Sbjct 95407 --CCCAT---CTAAACAACCG-TCCCACCAAGCAGGCTGTTCAGGACGTTATCACTGAGG 95460 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || ||||||| | |||||| | |||| || ||||| || |||||||| |||| Sbjct 95461 CTGTCACTATCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGA 95520 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 |||| | ||| | || ||||| |||||||| |||||||| | | ||||| Sbjct 95521 ACGCCGCTTTGATGAAGCAATATATCGAATTTGTGGCCGATCGTCTTCTCCT--AGCTCT 95578 Query 52738 -GGCAGCCA-AAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 |||| ||| ||||||| |||| | ||| || ||||| || || ||| | || || Sbjct 95579 AGGCAACCAGAAGTACTACAACTCGTCG-AACCCGTTCGACTTCATGGAGTCGATATCAT 95637 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 | | |||||||||||||| ||||||||||| || || || ||| || Sbjct 95638 TGGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAG 95684 >seq3645 Length=87304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||||||| | || | | ||||| ||||| || || | Sbjct 25783 GACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCG 25724 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||||||||||||||| || |||||||| || || || || || | | Sbjct 25723 AAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACA 25664 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||| || ||||||| || | || || ||||| || || || Sbjct 25663 TTG-TCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTT 25605 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 25604 GACGAAGATTTGCAT 25590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||| || |||| || || |||||| | || ||||| | | Sbjct 26009 CTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAA 25950 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | ||||| ||||| || || ||||| || ||||| ||| | |||| |||| | Sbjct 25949 GATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTC-TTGAATCTTTGACTTAACGT 25891 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||| | || || || || | ||| | ||| || || || || || ||| Sbjct 25890 TG-TCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTT 25832 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 25831 ACGAAGATTTGCAT 25818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | ||||||| ||||| || || || |||| Sbjct 25555 GATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCG 25496 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | |||||| || || ||||| || || |||||||| ||| || || | | Sbjct 25495 AAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACA 25436 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | || |||||||| | || | || || ||||| || || || Sbjct 25435 TTG-TCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTT 25377 Query 138600 TACAA 138604 |||| Sbjct 25376 GACAA 25372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496238263037520