Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 104 2e-17
seq3645 87.8 2e-12
>seq1688
Length=109735
Score = 104 bits (114), Expect = 2e-17
Identities = 347/527 (66%), Gaps = 25/527 (5%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| | || || || || | ||||| || || |||||| | | | | | |
Sbjct 95172 GTTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTCT 95231
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC--CGGCA 52443
|| | || | ||| | || |||||||| || ||||| | |||| ||| |||
Sbjct 95232 ACCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGG--TATTTTCTTCAGCGGTT 95289
Query 52444 GCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503
|||||| | || || | |||| | | || | ||||| |||||||| ||| |
Sbjct 95290 CCTTTGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGA 95349
Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563
|||| | || || ||||| || || || ||||| |||||||| |||||| || |
Sbjct 95350 ACGAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGCCTGCCTCCTCTTCT--- 95406
Query 52564 CGCGCGTGACCGAAAAATTGGATTCGGACACG-ATCCTG---AGCATGTT--CAAGGAGG 52617
| | | | ||| | | | | || | | ||| || | ||| || ||||
Sbjct 95407 --CCCAT---CTAAACAACCG-TCCCACCAAGCAGGCTGTTCAGGACGTTATCACTGAGG 95460
Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677
| || ||||||| | |||||| | |||| || ||||| || |||||||| ||||
Sbjct 95461 CTGTCACTATCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGA 95520
Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737
|||| | ||| | || ||||| |||||||| |||||||| | | |||||
Sbjct 95521 ACGCCGCTTTGATGAAGCAATATATCGAATTTGTGGCCGATCGTCTTCTCCT--AGCTCT 95578
Query 52738 -GGCAGCCA-AAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794
|||| ||| ||||||| |||| | ||| || ||||| || || ||| | || ||
Sbjct 95579 AGGCAACCAGAAGTACTACAACTCGTCG-AACCCGTTCGACTTCATGGAGTCGATATCAT 95637
Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
| | |||||||||||||| ||||||||||| || || || ||| ||
Sbjct 95638 TGGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTATCAG 95684
>seq3645
Length=87304
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || ||||||||||||||| | || | | ||||| ||||| || || |
Sbjct 25783 GACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCG 25724
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| ||||||||||||||||| || |||||||| || || || || || | |
Sbjct 25723 AAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACA 25664
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||| | ||| || ||||||| || | || || ||||| || || ||
Sbjct 25663 TTG-TCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTT 25605
Query 138600 TACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 25604 GACGAAGATTTGCAT 25590
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||||||||||||||| || |||| || || |||||| | || ||||| | |
Sbjct 26009 CTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAA 25950
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
||| | ||||| ||||| || || ||||| || ||||| ||| | |||| |||| |
Sbjct 25949 GATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTC-TTGAATCTTTGACTTAACGT 25891
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | ||||| | || || || || | ||| | ||| || || || || || |||
Sbjct 25890 TG-TCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTT 25832
Query 138601 ACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 25831 ACGAAGATTTGCAT 25818
Score = 84.2 bits (92), Expect = 2e-11
Identities = 131/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| |||||||||||| | ||||||| ||||| || || || ||||
Sbjct 25555 GATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCG 25496
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | |||||| || || ||||| || || |||||||| ||| || || | |
Sbjct 25495 AAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACA 25436
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | || |||||||| | || | || || ||||| || || ||
Sbjct 25435 TTG-TCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTT 25377
Query 138600 TACAA 138604
||||
Sbjct 25376 GACAA 25372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496238263037520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |