Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3190 161 1e-34 seq1688 104 3e-17 seq842 102 1e-16 >seq3190 Length=146739 Score = 161 bits (178), Expect = 1e-34 Identities = 376/560 (67%), Gaps = 9/560 (2%) Strand=Plus/Plus Query 116668 TAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACA 116726 ||||| || ||||| || || || ||| | || | || ||||| || | | ||||| Sbjct 23121 TAGAGTGCTTCAAATTCGTCTCCGTACA-CATCAGCCAGACCTGGAGCTTCGTTGGGACA 23179 Query 116727 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 |||||| | ||||| || || ||| || |||||||| || || || ||| |||| || Sbjct 23180 GAAGAGTGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAG 23239 Query 116787 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 ||| |||| ||||| || ||| |||| || | ||| ||||| ||||| ||||| Sbjct 23240 AGCCAAGAATAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAA 23299 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC- 116905 ||| || | || ||| |||||||| || || ||||| | || | | | ||| || | Sbjct 23300 AAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACG-CACCTGGCCGCT 23358 Query 116906 ---GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 |||| | |||| ||||| ||||| || ||| || || || ||||| || | | Sbjct 23359 TGTTACCACCTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAA 23418 Query 116963 TACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGA 117022 | || | || || ||||| || ||| ||| | |||||| || | || | Sbjct 23419 TCCCGTTCGAGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAA 23478 Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082 ||| || ||||| || || ||| ||| ||||| | ||||| | | | || ||| Sbjct 23479 TGTTCAGCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGT 23538 Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142 |||| || || || ||| | || | | | ||||||||| | || ||||| Sbjct 23539 AGATACCTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTT 23598 Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACATC 117201 ||| ||||||||||||||||| ||||| | |||||| |||| ||| ||| ||||| Sbjct 23599 GTGGAGTACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAA-ATATTTTTGAGACATA 23657 Query 117202 TTATCGTAGGTCTCCAAGAC 117221 || |||||||| | ||| Sbjct 23658 AGATTATAGGTCTCAAGGAC 23677 >seq1688 Length=109735 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| || || ||||| ||||| ||||||||| ||| || Sbjct 95392 GCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCCC 95333 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| |||||||||||||| | ||||||||| | ||| || || |||||| || Sbjct 95332 GGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGCTGAAGAAAATA 95273 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||||||| ||||| |||| || || | || |||| Sbjct 95272 CCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGG 95233 >seq842 Length=73752 Score = 102 bits (112), Expect = 1e-16 Identities = 249/369 (67%), Gaps = 19/369 (5%) Strand=Plus/Plus Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG-CTCGGAAACAT 176714 |||||||| |||| ||||||||| ||||||| | ||||| || || ||| | || Sbjct 25002 ACCATCGTGATCCTGATCCGTCATGATCATGATGTGCCCATAACGGAGACTCTTGCA-AT 25060 Query 176715 CTTGATAATCCTTACCTTGT--TGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTG 176772 | || || ||| | ||||| | ||| || | | |||||||| | | | ||| Sbjct 25061 CCTGGTAGTCCGT--CTTGTGCTTAAGCCCTATGAACTTCTTGATGTTCTGTATCTCCGC 25118 Query 176773 GTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGG 176832 |||| | || ||| | ||||| ||||| |||||||| | ||| || || || || Sbjct 25119 GTTTTTCGAGATTTGGTCGACTGAGGCGTCTCGGACATTGAGAAGCTTACCACGAAGGGG 25178 Query 176833 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 176892 ||| || ||| | ||||| | ||||| || ||| | ||||| | ||| | ||| || Sbjct 25179 GAAAACGCCGAAAAGATCAGGCCCAACGACTGAGCGCCCAGCCATTGCCAAACCCTTGGC 25238 Query 176893 GGAATCACCCTCCGTCACGATGAGCGTACACTT---TCCAGATTGTGCCGTCCCCGCCTT 176949 ||||| || ||||||| ||| | |||||| | ||| | || | || || || Sbjct 25239 CGAATCTCCTTCCGTCAAGATCAACGTACATTGGTATCCGTCCTTTG---TGCCAGCTTT 25295 Query 176950 GTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT--ACGAGCACCATCTGTC 177007 ||| |||||| || |||||| | || ||||| ||| |||| |||||| || Sbjct 25296 GTTAGCATCGGTCAGCTTGGGGTT----GTCCATTTGG-CTTCGACGATTACCATCGCTC 25350 Query 177008 TTCTTGAGT 177016 ||||||||| Sbjct 25351 TTCTTGAGT 25359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613477360543560