Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 161 1e-34
seq1688 104 3e-17
seq842 102 1e-16
>seq3190
Length=146739
Score = 161 bits (178), Expect = 1e-34
Identities = 376/560 (67%), Gaps = 9/560 (2%)
Strand=Plus/Plus
Query 116668 TAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACA 116726
||||| || ||||| || || || ||| | || | || ||||| || | | |||||
Sbjct 23121 TAGAGTGCTTCAAATTCGTCTCCGTACA-CATCAGCCAGACCTGGAGCTTCGTTGGGACA 23179
Query 116727 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786
|||||| | ||||| || || ||| || |||||||| || || || ||| |||| ||
Sbjct 23180 GAAGAGTGTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAG 23239
Query 116787 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846
||| |||| ||||| || ||| |||| || | ||| ||||| ||||| |||||
Sbjct 23240 AGCCAAGAATAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAA 23299
Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC- 116905
||| || | || ||| |||||||| || || ||||| | || | | | ||| || |
Sbjct 23300 AAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACG-CACCTGGCCGCT 23358
Query 116906 ---GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962
|||| | |||| ||||| ||||| || ||| || || || ||||| || | |
Sbjct 23359 TGTTACCACCTTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAA 23418
Query 116963 TACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGA 117022
| || | || || ||||| || ||| ||| | |||||| || | || |
Sbjct 23419 TCCCGTTCGAGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAA 23478
Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082
||| || ||||| || || ||| ||| ||||| | ||||| | | | || |||
Sbjct 23479 TGTTCAGCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGT 23538
Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142
|||| || || || ||| | || | | | ||||||||| | || |||||
Sbjct 23539 AGATACCTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTT 23598
Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACATC 117201
||| ||||||||||||||||| ||||| | |||||| |||| ||| ||| |||||
Sbjct 23599 GTGGAGTACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAA-ATATTTTTGAGACATA 23657
Query 117202 TTATCGTAGGTCTCCAAGAC 117221
|| |||||||| | |||
Sbjct 23658 AGATTATAGGTCTCAAGGAC 23677
>seq1688
Length=109735
Score = 104 bits (114), Expect = 3e-17
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| || ||||| || || ||||| ||||| ||||||||| ||| ||
Sbjct 95392 GCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCCC 95333
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||| |||||||||||||| | ||||||||| | ||| || || |||||| ||
Sbjct 95332 GGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGCTGAAGAAAATA 95273
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
||||||||| ||||| |||| || || | || ||||
Sbjct 95272 CCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGG 95233
>seq842
Length=73752
Score = 102 bits (112), Expect = 1e-16
Identities = 249/369 (67%), Gaps = 19/369 (5%)
Strand=Plus/Plus
Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG-CTCGGAAACAT 176714
|||||||| |||| ||||||||| ||||||| | ||||| || || ||| | ||
Sbjct 25002 ACCATCGTGATCCTGATCCGTCATGATCATGATGTGCCCATAACGGAGACTCTTGCA-AT 25060
Query 176715 CTTGATAATCCTTACCTTGT--TGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTG 176772
| || || ||| | ||||| | ||| || | | |||||||| | | | |||
Sbjct 25061 CCTGGTAGTCCGT--CTTGTGCTTAAGCCCTATGAACTTCTTGATGTTCTGTATCTCCGC 25118
Query 176773 GTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGG 176832
|||| | || ||| | ||||| ||||| |||||||| | ||| || || || ||
Sbjct 25119 GTTTTTCGAGATTTGGTCGACTGAGGCGTCTCGGACATTGAGAAGCTTACCACGAAGGGG 25178
Query 176833 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 176892
||| || ||| | ||||| | ||||| || ||| | ||||| | ||| | ||| ||
Sbjct 25179 GAAAACGCCGAAAAGATCAGGCCCAACGACTGAGCGCCCAGCCATTGCCAAACCCTTGGC 25238
Query 176893 GGAATCACCCTCCGTCACGATGAGCGTACACTT---TCCAGATTGTGCCGTCCCCGCCTT 176949
||||| || ||||||| ||| | |||||| | ||| | || | || || ||
Sbjct 25239 CGAATCTCCTTCCGTCAAGATCAACGTACATTGGTATCCGTCCTTTG---TGCCAGCTTT 25295
Query 176950 GTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT--ACGAGCACCATCTGTC 177007
||| |||||| || |||||| | || ||||| ||| |||| |||||| ||
Sbjct 25296 GTTAGCATCGGTCAGCTTGGGGTT----GTCCATTTGG-CTTCGACGATTACCATCGCTC 25350
Query 177008 TTCTTGAGT 177016
|||||||||
Sbjct 25351 TTCTTGAGT 25359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613477360543560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |