Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1688 132 8e-26 >seq1688 Length=109735 Score = 132 bits (146), Expect = 8e-26 Identities = 335/507 (66%), Gaps = 27/507 (5%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| ||| ||||| || |||||||| |||| ||||| Sbjct 95666 CTTCTCGAAGAAGTTGGTCTTGCCAGCCAATGATATCGACTCCATGAAGTCGAACGGGTT 95607 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | | || ||| |||| | || ||||| || | | || ||||||||||| Sbjct 95606 CGACGAGTTGTAGTACTTCTGGTTGCCTAGAGCTAGGAGAAGACGATCGGCCACAAATTC 95547 Query 159769 GATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCTT 159824 ||| || ||| || || | ||| || |||||||| | || || || || | Sbjct 95546 GATATATTGCTTCA--TCAAAGCGGCGTTCATACCCAGCAGAGCGCAA--GGCAGAGCCT 95491 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT 159884 ||| |||||||| | ||| || ||| || || || | || | | ||| Sbjct 95490 CCGTTAGAAACTCTTGCTCGATAGTGACAGCCTCAGTGATAACGTCCTGAACAG------ 95437 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTA--------AACAGGAGGCACGCAAAGTCGCA 159936 || ||||| | || || ||| || |||||||| |||||||| Sbjct 95436 ---CCTGCTTGGTGGGACGGTTGT--TTAGATGGGAGAAGAGGAGGCAGGCAAAGTCAGT 95382 Query 159937 GTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCC 159996 ||| || ||||| || |||||||| | ||||| || | | | ||||||||||| | || Sbjct 95381 GTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCCCGGCATAAGACC 95322 Query 159997 ACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGC 160056 ||| || ||||| ||||| | ||||| | |||||| || || || |||||||| || Sbjct 95321 CCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGCTGAAGAAAATACCCTCCACAGC 95262 Query 160057 CGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGC 160116 || || || ||||| | | | | || | | ||| |||| ||| |||| | | || Sbjct 95261 AGCGAAGGCAACGAGGCGTTGAGCGAAGGTAGAGTTCTTGTCTTGGATCCATTTGATAGC 95202 Query 160117 CCATTCAGCCTTCTTTGCGATGCACGG 160143 ||| || || ||||| |||||| || Sbjct 95201 CCAGTCTGCTTTCTTACGGATGCAAGG 95175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795116525638960