Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 132 8e-26
>seq1688
Length=109735
Score = 132 bits (146), Expect = 8e-26
Identities = 335/507 (66%), Gaps = 27/507 (5%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||| ||| ||||| || |||||||| |||| |||||
Sbjct 95666 CTTCTCGAAGAAGTTGGTCTTGCCAGCCAATGATATCGACTCCATGAAGTCGAACGGGTT 95607
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| | || ||| |||| | || ||||| || | | || |||||||||||
Sbjct 95606 CGACGAGTTGTAGTACTTCTGGTTGCCTAGAGCTAGGAGAAGACGATCGGCCACAAATTC 95547
Query 159769 GATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCTT 159824
||| || ||| || || | ||| || |||||||| | || || || || |
Sbjct 95546 GATATATTGCTTCA--TCAAAGCGGCGTTCATACCCAGCAGAGCGCAA--GGCAGAGCCT 95491
Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT 159884
||| |||||||| | ||| || ||| || || || | || | | |||
Sbjct 95490 CCGTTAGAAACTCTTGCTCGATAGTGACAGCCTCAGTGATAACGTCCTGAACAG------ 95437
Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTA--------AACAGGAGGCACGCAAAGTCGCA 159936
|| ||||| | || || ||| || |||||||| ||||||||
Sbjct 95436 ---CCTGCTTGGTGGGACGGTTGT--TTAGATGGGAGAAGAGGAGGCAGGCAAAGTCAGT 95382
Query 159937 GTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCC 159996
||| || ||||| || |||||||| | ||||| || | | | ||||||||||| | ||
Sbjct 95381 GTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCCCGGCATAAGACC 95322
Query 159997 ACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGC 160056
||| || ||||| ||||| | ||||| | |||||| || || || |||||||| ||
Sbjct 95321 CCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGCTGAAGAAAATACCCTCCACAGC 95262
Query 160057 CGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGC 160116
|| || || ||||| | | | | || | | ||| |||| ||| |||| | | ||
Sbjct 95261 AGCGAAGGCAACGAGGCGTTGAGCGAAGGTAGAGTTCTTGTCTTGGATCCATTTGATAGC 95202
Query 160117 CCATTCAGCCTTCTTTGCGATGCACGG 160143
||| || || ||||| |||||| ||
Sbjct 95201 CCAGTCTGCTTTCTTACGGATGCAAGG 95175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795116525638960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |