Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq640 127 2e-24 seq3645 114 1e-20 seq1435 104 3e-17 >seq640 Length=121632 Score = 127 bits (140), Expect = 2e-24 Identities = 144/192 (75%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || || | ||||||||| ||||| | Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| || |||||||| | || | || ||||||||| |||||| ||||| | Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||||||||||| || || | |||||||| || |||||||| || || || | Sbjct 86649 CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGA 86590 Query 46584 AGAT-TTGCATT 46594 || | ||| ||| Sbjct 86589 AGCTGTTGGATT 86578 >seq3645 Length=87304 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| ||||| ||| | || || |||||||| |||||||| Sbjct 25552 TCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAG 25493 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | || ||| |||||| |||||| ||| | | Sbjct 25492 ATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTG 25433 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || |||||||| |||| |||||||| || || || || || || ||| Sbjct 25432 TCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGACA 25373 Query 46583 A 46583 | Sbjct 25372 A 25372 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||||||||| || ||||| || || || || |||| || Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| || ||||| ||||| ||||||||||| | || | | ||||||||| Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907 Query 46505 ATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | ||| | || |||||| ||||| || |||| ||| || || || Sbjct 25906 ATCTTTGACTTAA-CGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| || || || || |||||||||||| Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || ||||| || ||||| ||||| || || | ||| || | || || Sbjct 26255 CACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCCTC 26196 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || || || ||||||||||||||||| | || | | ||| || ||| Sbjct 26195 CAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCCTG 26136 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| |||||| | | | ||||| |||| || || |||| ||||| || Sbjct 26135 AATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTC---TCAACTTCCAAGGTGATCGT 26079 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || |||||||| ||||| Sbjct 26078 CTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| ||||| || || |||| |||||||| |||||||| || Sbjct 25271 CTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAA 25212 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||||||||| || | || | || ||||||||| ||||| ||||| | Sbjct 25211 GATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 25152 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | ||||| || ||||| || | |||||||| ||||| || Sbjct 25151 GTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 25104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||||||||| || || | | | || || || |||||||| ||||| Sbjct 25781 CTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAA 25722 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | | ||||| ||| |||||| ||||| | Sbjct 25721 GATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATT 25662 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||| || || | ||||| || ||||| || ||||| || || Sbjct 25661 GTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGAC 25602 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 25601 GAAGATTTGCAT 25590 >seq1435 Length=581194 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||||||||||||||| || ||||| || Sbjct 375897 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCG 375956 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| |||||||||||||| || | |||||| ||||| | || | || |||||| Sbjct 375957 TCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTG 376016 Query 46499 TC 46500 || Sbjct 376017 TC 376018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565210908217320