Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3658 84.2 2e-11
seq98 84.2 2e-11
>seq3658
Length=116049
Score = 84.2 bits (92), Expect = 2e-11
Identities = 131/181 (72%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074
||||||| |||||| || | || ||| | || |||| |||||||| || ||||||
Sbjct 9856 TCGTCAAAGTGAGGATGCGAACGACCAAGATTCCTCAGATCGGCGACAAATTCGCGTCGC 9915
Query 52075 T-CACGGCGCAAAAGGGGACG-TGCGGAGC-CGTCCTGACCCAGGAGGACATGCCCTTCG 52131
|||||| || || || || | ||| | | | | || || || ||||||||||||
Sbjct 9916 GGCACGGC-CAGAAAGGTACTATTGGGATCACTTACCGATCC--GAAGACATGCCCTTCA 9972
Query 52132 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191
|| || || |||||||| || ||||||||||| || |||||| |||| || | ||||
Sbjct 9973 CCAGCGAAGGTGTGGTGCCAGATCTCATCATCAATCCGCACGCCATTCCGTCTCGCATGA 10032
Query 52192 C 52192
|
Sbjct 10033 C 10033
>seq98
Length=790089
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826
|||||| || || || || || || || ||||||| |||| |||||||| ||
Sbjct 520346 GGAAAGTTCCTAGGTTCTCTTTCCAGTTGCACTTTCAGCGCATCCAGATGATCCAGATAC 520287
Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886
|| ||||||||||||| || |||| || |||||| || | || |||||
Sbjct 520286 ACATGAGCGTCTCCCATCGTTTGGATGAAAGTTCCCGGCGTAAGATCACATACATGAGCG 520227
Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
| ||||| ||||||| || |||| ||| ||||| ||||| || ||||| ||||| ||
Sbjct 520226 AGCATGTGTGTGAGGATAGCGTAGGAGGCAATGTTGAAGGGCACGCCGAGGCCCATATC 520168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408598222714943
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |