Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1688 129 1e-24 seq1258 98.7 2e-15 seq3190 95.1 2e-14 >seq1688 Length=109735 Score = 129 bits (142), Expect = 1e-24 Identities = 326/497 (66%), Gaps = 21/497 (4%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| || || |||||| | | ||| | |||| || | | || || || ||||| Sbjct 95199 TGGGCTATCAAATGGATCCAAGACAAGAACTCTACCTTCGCTCAACGCCTCGTTGCCTTC 95258 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 |||||||||||||| || || ||||||||||| ||||| | || |||||||| ||| || Sbjct 95259 GCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTTTGCATCAATTTTCTGGCTTAAGAAG 95318 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 ||| ||||| || ||| ||| || ||||| || ||| | || ||||| || Sbjct 95319 CGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGAACTTATCTCTCGCGATGAGGGGCTT 95378 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 |||| || ||||||||||| |||| | | ||| || || |||| || || | Sbjct 95379 CACACTGACTTTGCCTGCCTCCTCTTCTC---CCA---TCTAAAC-AACCGTCCCACCAA 95431 Query 26074 ACCG--TCTACAGTA--TCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | | | | ||| | | |||| |||||||| |||||| | ||||||| Sbjct 95432 GCAGGCTGTTCAGGACGTTATCACTGAGGCTGTCACTATCGAGCAAGAGTTTCTAACGGA 95491 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 |||| |||||| | | |||| ||||| || || | Sbjct 95492 GGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTTTGATGAAGCAATATATCGAATT 95551 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCT---GGGACTCGCCAGA--CTCTACAGTACGCCT 26244 ||||||||| | ||| | | | |||| || | ||||| ||||| || | Sbjct 95552 TGTGGCCGATCGTCT--TCTCCTAGCTCTAGGCA---ACCAGAAGTACTACAACTCGTCG 95606 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| |||| || |||||||||||||| || ||| Sbjct 95607 AACCCGTTCGACTTCATGGAGTCGATATCATTGGCTGGCAAGACCAACTTCTTCGAGAAG 95666 Query 26305 AGGGTCGGCGACTATCA 26321 | || || |||||||| Sbjct 95667 CGTGTTGGTGACTATCA 95683 >seq1258 Length=224305 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||| ||| || || ||||| ||| || ||| |||||||||||||| Sbjct 143944 CATCTTCTGGCTGAAGAAGCGTGGCTTCATGCACGGCCTCACCTTCTCCAACGAGCTCAT 143885 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||| || ||||| ||||||| ||| ||||| |||||||| ||| || Sbjct 143884 CAGCAGAGATGAGGGACTCCACACAGACTTTGCATGCCTGCTGTACTCG 143836 >seq3190 Length=146739 Score = 95.1 bits (104), Expect = 2e-14 Identities = 360/554 (65%), Gaps = 12/554 (2%) Strand=Plus/Plus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 ||||| | || |||||| | || |||| |||||| | |||||| | || || Sbjct 23130 TCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGTC 23189 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 || | ||| | | ||| | || ||| || || || ||| |||| || ||| || Sbjct 23190 CATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAAT 23249 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 ||||| | | || |||||| |||| || || | || ||||||||||| || Sbjct 23250 AGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAAG 23309 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | || |||||||| ||||| || || | || | || || || |||||||| ||||| Sbjct 23310 ACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACCT 23369 Query 222194 TGATCCACCATCCTCTC-CAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 || || | ||| |||| | | | |||||||| || || | || || | ||||| | Sbjct 23370 TGGTCGA-CAT-ATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCG 23427 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAG-ACA 222308 | ||||| ||||| |||||||| ||| ||| | || ||| || | || Sbjct 23428 AGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTC---GGATACGATGAATGTTCA 23484 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 || || || || || |||||||||| |||||| |||| | ||||| ||| | Sbjct 23485 GCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATAC 23544 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-TGGTG 222427 | || || |||||| || | || | || || || || | || ||| | || ||| | Sbjct 23545 CTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAG 23604 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || ||||| || || || || |||||| || || || |||||| |||| Sbjct 23605 TACCA-GCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTA 23663 Query 222488 TACGTCTCTACGAC 222501 || ||||| | ||| Sbjct 23664 TAGGTCTCAAGGAC 23677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928799623311040