Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 129 1e-24
seq1258 98.7 2e-15
seq3190 95.1 2e-14
>seq1688
Length=109735
Score = 129 bits (142), Expect = 1e-24
Identities = 326/497 (66%), Gaps = 21/497 (4%)
Strand=Plus/Plus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
||||| || || |||||| | | ||| | |||| || | | || || || |||||
Sbjct 95199 TGGGCTATCAAATGGATCCAAGACAAGAACTCTACCTTCGCTCAACGCCTCGTTGCCTTC 95258
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|||||||||||||| || || ||||||||||| ||||| | || |||||||| ||| ||
Sbjct 95259 GCTGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTTTGCATCAATTTTCTGGCTTAAGAAG 95318
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
||| ||||| || ||| ||| || ||||| || ||| | || ||||| ||
Sbjct 95319 CGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGAACTTATCTCTCGCGATGAGGGGCTT 95378
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073
|||| || ||||||||||| |||| | | ||| || || |||| || || |
Sbjct 95379 CACACTGACTTTGCCTGCCTCCTCTTCTC---CCA---TCTAAAC-AACCGTCCCACCAA 95431
Query 26074 ACCG--TCTACAGTA--TCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
| | | | ||| | | |||| |||||||| |||||| | |||||||
Sbjct 95432 GCAGGCTGTTCAGGACGTTATCACTGAGGCTGTCACTATCGAGCAAGAGTTTCTAACGGA 95491
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
|||| |||||| | | |||| ||||| || || |
Sbjct 95492 GGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCTTTGATGAAGCAATATATCGAATT 95551
Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCT---GGGACTCGCCAGA--CTCTACAGTACGCCT 26244
||||||||| | ||| | | | |||| || | ||||| ||||| || |
Sbjct 95552 TGTGGCCGATCGTCT--TCTCCTAGCTCTAGGCA---ACCAGAAGTACTACAACTCGTCG 95606
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
|||||||||||||| ||||| ||||| |||| || |||||||||||||| || |||
Sbjct 95607 AACCCGTTCGACTTCATGGAGTCGATATCATTGGCTGGCAAGACCAACTTCTTCGAGAAG 95666
Query 26305 AGGGTCGGCGACTATCA 26321
| || || ||||||||
Sbjct 95667 CGTGTTGGTGACTATCA 95683
>seq1258
Length=224305
Score = 98.7 bits (108), Expect = 2e-15
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994
|||||||||||| ||| || || ||||| ||| || ||| ||||||||||||||
Sbjct 143944 CATCTTCTGGCTGAAGAAGCGTGGCTTCATGCACGGCCTCACCTTCTCCAACGAGCTCAT 143885
Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043
|||||| || ||||| ||||||| ||| ||||| |||||||| ||| ||
Sbjct 143884 CAGCAGAGATGAGGGACTCCACACAGACTTTGCATGCCTGCTGTACTCG 143836
>seq3190
Length=146739
Score = 95.1 bits (104), Expect = 2e-14
Identities = 360/554 (65%), Gaps = 12/554 (2%)
Strand=Plus/Plus
Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013
||||| | || |||||| | || |||| |||||| | |||||| | || ||
Sbjct 23130 TCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGTC 23189
Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073
|| | ||| | | ||| | || ||| || || || ||| |||| || ||| ||
Sbjct 23190 CATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAAT 23249
Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133
||||| | | || |||||| |||| || || | || ||||||||||| ||
Sbjct 23250 AGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAAG 23309
Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193
| || |||||||| ||||| || || | || | || || || |||||||| |||||
Sbjct 23310 ACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACCT 23369
Query 222194 TGATCCACCATCCTCTC-CAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|| || | ||| |||| | | | |||||||| || || | || || | ||||| |
Sbjct 23370 TGGTCGA-CAT-ATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCG 23427
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAG-ACA 222308
| ||||| ||||| |||||||| ||| ||| | || ||| || | ||
Sbjct 23428 AGGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTC---GGATACGATGAATGTTCA 23484
Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368
|| || || || || |||||||||| |||||| |||| | ||||| ||| |
Sbjct 23485 GCCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATAC 23544
Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-TGGTG 222427
| || || |||||| || | || | || || || || | || ||| | || ||| |
Sbjct 23545 CTTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAG 23604
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| || ||||| || || || || |||||| || || || |||||| ||||
Sbjct 23605 TACCA-GCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTA 23663
Query 222488 TACGTCTCTACGAC 222501
|| ||||| | |||
Sbjct 23664 TAGGTCTCAAGGAC 23677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928799623311040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |