Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq77 100 2e-15 >seq77 Length=51578 Score = 100 bits (110), Expect = 2e-15 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 474657 CACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATC 474716 |||| ||| | || || |||||||| ||| | || |||| | || || || || | Sbjct 19253 CACCAGAAGAGATCTCCTCAATGGTCTTAACAAAGATGAGGGAGACTGCCGAATCGTACC 19194 Query 474717 TTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAAC 474776 | ||| ||| | |||| || | || || || || ||||| || || ||||||| Sbjct 19193 TGGGAGGGACAGTCAACAATGCCGTGGTGACAGTCCCCGCCTATTTCAACGACTCTCAAC 19134 Query 474777 GTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 |||||||||| |||||||| || || || ||||| || ||| ||||||| || || | Sbjct 19133 GTCAAGCAACAAAAGATGCCGGTCTCATCGCTGGTCTCAACGTTCTACGTATCATCAACG 19074 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| || || || || | || || ||||| || ||||| Sbjct 19073 AACCCACTGCCGCTGCCATCGCCTACGGTCTCGACAAGAA 19034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268012296130868