Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 91.5 2e-13
>seq1688
Length=109735
Score = 91.5 bits (100), Expect = 2e-13
Identities = 193/285 (68%), Gaps = 5/285 (2%)
Strand=Plus/Minus
Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481
|| || |||||||||||||| | | || || | || || || ||| | |||||
Sbjct 95078 TCCTTGATATAAGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATG 95019
Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT-TGAATCTCGCTATAAAATCTTTC 18540
|||||||||| || || ||| ||||| || ||| |||| |||| | || | ||
Sbjct 95018 ATCTGAAAACCGTAGAAGCATCGTGCCTCAGG-TATCTGAACTTCGCCACTGAAGCGCTC 94960
Query 18541 TACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAAT 18600
|| | ||||| || || ||||| || | | || || || || | |||| ||
Sbjct 94959 AACGAGGTTCTCGTTGACGATACCATCTGATGCAGCAAAGAAGGCAAGGACATGGGAGAT 94900
Query 18601 GAAATGTTTTTCATTATCCTTGA---GATTGTTCCATTCATCTATATCTTTTGATAGATC 18657
||||| ||||| ||| |||| | |||||||| || | |||||| || || ||
Sbjct 94899 GAAATAGCGTTCATCATCGTTGAGTCGGTTGTTCCAATCGTGCCAATCTTTCGAGAGGTC 94840
Query 18658 AACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702
|| ||||||| ||||| || || | |||||||| ||||||||
Sbjct 94839 AATCTCTTCCGCGGTCCAGAATGACGCTTCGGCCTTCTTGTACAT 94795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731836403575600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |