Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1688 91.5 2e-13 >seq1688 Length=109735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/285 (68%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || |||||||||||||| | | || || | || || || ||| | ||||| Sbjct 95078 TCCTTGATATAAGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATG 95019 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT-TGAATCTCGCTATAAAATCTTTC 18540 |||||||||| || || ||| ||||| || ||| |||| |||| | || | || Sbjct 95018 ATCTGAAAACCGTAGAAGCATCGTGCCTCAGG-TATCTGAACTTCGCCACTGAAGCGCTC 94960 Query 18541 TACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAAT 18600 || | ||||| || || ||||| || | | || || || || | |||| || Sbjct 94959 AACGAGGTTCTCGTTGACGATACCATCTGATGCAGCAAAGAAGGCAAGGACATGGGAGAT 94900 Query 18601 GAAATGTTTTTCATTATCCTTGA---GATTGTTCCATTCATCTATATCTTTTGATAGATC 18657 ||||| ||||| ||| |||| | |||||||| || | |||||| || || || Sbjct 94899 GAAATAGCGTTCATCATCGTTGAGTCGGTTGTTCCAATCGTGCCAATCTTTCGAGAGGTC 94840 Query 18658 AACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 || ||||||| ||||| || || | |||||||| |||||||| Sbjct 94839 AATCTCTTCCGCGGTCCAGAATGACGCTTCGGCCTTCTTGTACAT 94795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731836403575600