Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3584 122 1e-21 seq3190 109 7e-18 seq1688 96.9 4e-14 seq378 89.7 6e-12 >seq3584 Length=325962 Score = 122 bits (134), Expect = 1e-21 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||| || || ||||| || |||||| | ||||||||| | || || ||| Sbjct 139281 GCCGCCAACTACCTTGATATTAAGCCCCTCCTCGATGTCGGGTGCAAGACCGTTGCGAAC 139222 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| || ||||| |||||||||||||| || || || ||| Sbjct 139221 ATGATCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACCTTCAATATTCAGAACG 139167 >seq3190 Length=146739 Score = 109 bits (120), Expect = 7e-18 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || | ||| |||| ||| ||||| |||||||| ||||| | ||||| || Sbjct 23370 TGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAG 23429 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCA--CCTTG--TGCGCGGCAAA 1630181 ||||| ||||| || | ||| | |||| ||| || | | || || | || Sbjct 23430 GACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGC--- 23486 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||| || |||| ||| ||||| || ||||| || | ||||||||||| || Sbjct 23487 -CCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACC 23545 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||| | |||||||| ||||| |||||||| | || || || | || Sbjct 23546 TTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGT 23605 Query 1630302 GCCGGCGTTGAAGAGCGTGGG 1630322 || ||||||||||| || || Sbjct 23606 ACCAGCGTTGAAGAGAGTTGG 23626 >seq1688 Length=109735 Score = 96.9 bits (106), Expect = 4e-14 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| |||||||||||||| | | || ||| ||||||| Sbjct 95680 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAATGATATCGACTCCATG 95621 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||||||||| | || ||||||| ||| | | || || | ||| || || Sbjct 95620 AAGTCGAACGGGTTCGACGAGTTGTAGTACTTCTGGTTGCCTAGAGCTAGGAGAAGACGA 95561 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GATGAGCGCCA 868877 ||||| ||||| ||||| || || ||| | |||||||||| || | |||||| | Sbjct 95560 TCGGCCACAAATTCGATATATTGCTTCATCAAAGCGGCGTTCATACCCAGCAGAGCGCAA 95501 Query 868878 CCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||||| | ||| | | |||||||| |||||| ||| ||||| Sbjct 95500 --GGCAGAGCCTCCGTTAGAAACTCTTGCTCGATAGTGACAGCCTC 95457 >seq378 Length=81475 Score = 89.7 bits (98), Expect = 6e-12 Identities = 116/159 (73%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||| |||||||||||||| |||||||||||| |||||| || | ||||| |||| Sbjct 53342 AGGATAGCATCGGCGGCACAGTGACGTGCGTGATCCGCAACTGCCCTGTCGGCCTTGGCG 53283 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| ||| || || | || || | | || ||||| ||||| || || |||| Sbjct 53282 AGCCAGTCTTCGATAAACTAGAAGCTATGTTAGCGCACGCAATGCTCAGCATACCAGCCA 53223 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 |||| || |||||||| ||| ||| || |||| |||| Sbjct 53222 CCAAAGGCTTCGAGATCGGCTCCGGCTTCGGCGGTTGCG 53184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106819886318447