Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3584 122 1e-21
seq3190 109 7e-18
seq1688 96.9 4e-14
seq378 89.7 6e-12
>seq3584
Length=325962
Score = 122 bits (134), Expect = 1e-21
Identities = 96/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|||||||||||||| || || ||||| || |||||| | ||||||||| | || || |||
Sbjct 139281 GCCGCCAACTACCTTGATATTAAGCCCCTCCTCGATGTCGGGTGCAAGACCGTTGCGAAC 139222
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| || ||||| |||||||||||||| || || || |||
Sbjct 139221 ATGATCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACCTTCAATATTCAGAACG 139167
>seq3190
Length=146739
Score = 109 bits (120), Expect = 7e-18
Identities = 182/261 (70%), Gaps = 8/261 (3%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|||||||| || | ||| |||| ||| ||||| |||||||| ||||| | ||||| ||
Sbjct 23370 TGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAG 23429
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCA--CCTTG--TGCGCGGCAAA 1630181
||||| ||||| || | ||| | |||| ||| || | | || || | ||
Sbjct 23430 GACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGC--- 23486
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|| ||||| || |||| ||| ||||| || ||||| || | ||||||||||| ||
Sbjct 23487 -CCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACC 23545
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301
|| || ||| | |||||||| ||||| |||||||| | || || || | ||
Sbjct 23546 TTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGT 23605
Query 1630302 GCCGGCGTTGAAGAGCGTGGG 1630322
|| ||||||||||| || ||
Sbjct 23606 ACCAGCGTTGAAGAGAGTTGG 23626
>seq1688
Length=109735
Score = 96.9 bits (106), Expect = 4e-14
Identities = 158/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759
|| || || || ||| |||||| |||||||||||||| | | || ||| |||||||
Sbjct 95680 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAATGATATCGACTCCATG 95621
Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819
| ||||||||| | || ||||||| ||| | | || || | ||| || ||
Sbjct 95620 AAGTCGAACGGGTTCGACGAGTTGTAGTACTTCTGGTTGCCTAGAGCTAGGAGAAGACGA 95561
Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GATGAGCGCCA 868877
||||| ||||| ||||| || || ||| | |||||||||| || | |||||| |
Sbjct 95560 TCGGCCACAAATTCGATATATTGCTTCATCAAAGCGGCGTTCATACCCAGCAGAGCGCAA 95501
Query 868878 CCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
||||| | ||| | | |||||||| |||||| ||| |||||
Sbjct 95500 --GGCAGAGCCTCCGTTAGAAACTCTTGCTCGATAGTGACAGCCTC 95457
>seq378
Length=81475
Score = 89.7 bits (98), Expect = 6e-12
Identities = 116/159 (73%), Gaps = 1/159 (1%)
Strand=Plus/Minus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
|||| |||||||||||||| |||||||||||| |||||| || | ||||| ||||
Sbjct 53342 AGGATAGCATCGGCGGCACAGTGACGTGCGTGATCCGCAACTGCCCTGTCGGCCTTGGCG 53283
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
|||| ||| || || | || || | | || ||||| ||||| || || ||||
Sbjct 53282 AGCCAGTCTTCGATAAACTAGAAGCTATGTTAGCGCACGCAATGCTCAGCATACCAGCCA 53223
Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202
|||| || |||||||| ||| ||| || |||| ||||
Sbjct 53222 CCAAAGGCTTCGAGATCGGCTCCGGCTTCGGCGGTTGCG 53184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106819886318447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |