Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3645 105 6e-18 >seq3645 Length=87304 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| |||||||| || || ||||| ||||| || ||||||||||| |||||||| Sbjct 25446 AAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGGAAG 25505 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | | || || || ||||| ||||||||||| || || ||| Sbjct 25506 CAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAATCCACTCTCCAC 25565 Query 24908 TTGGTG 24913 | ||| Sbjct 25566 CTCGTG 25571 Score = 102 bits (112), Expect = 7e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || ||||| ||||| ||| | | Sbjct 25818 ATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATCA 25877 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| |||| ||| |||||||| || || || || || || || Sbjct 25878 GACACGATTGACAACGTTAAGTCAAA-GATTCAAGACAAGGAGGGTATCCCACCAGACCA 25936 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATT-CGAGAAACATGTCAGATTATA 24881 || || |||||||| || || || ||| ||||||| | || || || ||||| | Sbjct 25937 GCAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACAC-TGAGTGATTACA 25995 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||||| || | |||||||| | || ||||||| || Sbjct 25996 ACATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGG 26044 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| ||||| || ||||| ||||| || || |||||||||||||| ||| Sbjct 25164 AAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCAAA 25223 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || || | | | | || || |||||||| || ||||| || || || ||| Sbjct 25224 CAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCCAC 25283 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| | || | || |||||| Sbjct 25284 TTGGTCCTACGTCTTCGGGGAGGC 25307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | ||||| || | || Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCC 26105 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || || ||||| || || || || || || Sbjct 26106 GACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAG 26165 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || |||||||||||| | | |||| ||||| ||| Sbjct 26166 CAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAAC 26225 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || ||| ||||| Sbjct 26226 ATCCAGAAAGAGAGCACCCTGCACCTGGTG 26255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449875718105480