Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 105 6e-18
>seq3645
Length=87304
Score = 105 bits (116), Expect = 6e-18
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| |||||||| || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 25446 AAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGGAAG 25505
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| |||||| | | | | || || || ||||| ||||||||||| || || |||
Sbjct 25506 CAGCTTGAGGATGGGCGTACTCTCTCCGACTACAACATCCAAAAGGAATCCACTCTCCAC 25565
Query 24908 TTGGTG 24913
| |||
Sbjct 25566 CTCGTG 25571
Score = 102 bits (112), Expect = 7e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || || || || || ||||| ||||| ||| | |
Sbjct 25818 ATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATCA 25877
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| |||| ||| |||||||| || || || || || || ||
Sbjct 25878 GACACGATTGACAACGTTAAGTCAAA-GATTCAAGACAAGGAGGGTATCCCACCAGACCA 25936
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATT-CGAGAAACATGTCAGATTATA 24881
|| || |||||||| || || || ||| ||||||| | || || || ||||| |
Sbjct 25937 GCAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACAC-TGAGTGATTACA 25995
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||||| || | |||||||| | || ||||||| ||
Sbjct 25996 ACATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGG 26044
Score = 98.7 bits (108), Expect = 9e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| || ||||| ||||| || ||||| ||||| || || |||||||||||||| |||
Sbjct 25164 AAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCAAA 25223
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| || || | | | | || || |||||||| || ||||| || || || |||
Sbjct 25224 CAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCCAC 25283
Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931
||||| | || | || ||||||
Sbjct 25284 TTGGTCCTACGTCTTCGGGGAGGC 25307
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || | ||||| || | ||
Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCC 26105
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || ||||| || || ||||| || || || || || ||
Sbjct 26106 GACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAG 26165
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||||||| || || |||||||||||| | | |||| ||||| |||
Sbjct 26166 CAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAAC 26225
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || || || || || ||| |||||
Sbjct 26226 ATCCAGAAAGAGAGCACCCTGCACCTGGTG 26255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449875718105480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |