Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 120 2e-22
seq1435 95.1 8e-15
seq640 91.5 1e-13
>seq3645
Length=87304
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||| || |||||||| | ||||||||| ||||| ||||| || ||||| | | || |
Sbjct 26261 CCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCC 26202
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| ||||| |||||||| || ||||||| || ||||||||| | || | ||||| ||
Sbjct 26201 ATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTT 26142
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
|| | || || |||||| | || | || | ||| || || | ||| ||
Sbjct 26141 ATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGAT 26082
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| || || ||||| ||||||||||||||
Sbjct 26081 CGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||||||||||| |||||||| || || || | || | ||
Sbjct 26029 AGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCC 25970
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || |||||||||| || ||||||||| | || | |||||||||||
Sbjct 25969 TCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 25910
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| || ||| | |||| || | ||||| || | ||||| |||
Sbjct 25909 TGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTC 25850
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| ||||||||||| ||||| |||||
Sbjct 25849 TTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||| ||||||||||| ||||| || || | | | ||||
Sbjct 25801 AGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCC 25742
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||||||||| || |||||||| || || || ||||| | || | || ||||| ||
Sbjct 25741 TCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCC 25682
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||| || ||||| | |||| || | ||||| || | || || |||
Sbjct 25681 TGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTC 25622
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| ||||| || ||||| |||||
Sbjct 25621 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||||||| |||||||||||||||||| | || | ||
Sbjct 25291 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCT 25232
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || ||||| ||||||| || ||||| || | || | || ||||||||
Sbjct 25231 TCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 25172
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || |||| ||| ||
Sbjct 25171 TGAATCTTGGACTTGAC--AT--TGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGAT 25116
Query 34942 GGTCTTTCCCGTGA 34955
|||||| || ||||
Sbjct 25115 GGTCTTGCCAGTGA 25102
>seq1435
Length=581194
Score = 95.1 bits (104), Expect = 8e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809
||| || | || || ||| |||||||| | |||| ||||||||| || || ||||| ||
Sbjct 375884 TCCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 375943
Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||| |||| | || || |||||||| ||||||||||| || || || ||||| | ||
Sbjct 375944 GAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 376003
Query 34870 CACCCCCTCCTTGTC 34884
| || ||||||||
Sbjct 376004 GATGCCTTCCTTGTC 376018
>seq640
Length=121632
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/186 (72%), Gaps = 8/186 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || |||| |||| |||| ||||| || |||||||
Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||||||||| | || | || |||||||| | || || ||||| ||
Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGAC--AT- 86653
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || | | ||||| || | ||| |||||||| ||||| || |||||
Sbjct 86652 -TGTCGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTG 86594
Query 34964 ACAAAG 34969
|| |||
Sbjct 86593 ACGAAG 86588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325677355138529
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |