Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3645 120 2e-22 seq1435 95.1 8e-15 seq640 91.5 1e-13 >seq3645 Length=87304 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||||||| | ||||||||| ||||| ||||| || ||||| | | || | Sbjct 26261 CCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCC 26202 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| |||||||| || ||||||| || ||||||||| | || | ||||| || Sbjct 26201 ATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTT 26142 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || |||||| | || | || | ||| || || | ||| || Sbjct 26141 ATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTGAT 26082 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || ||||| |||||||||||||| Sbjct 26081 CGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||||||||||| |||||||| || || || | || | || Sbjct 26029 AGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCC 25970 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| || ||||||||| | || | ||||||||||| Sbjct 25969 TCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 25910 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | |||| || | ||||| || | ||||| ||| Sbjct 25909 TGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTC 25850 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||||||||| ||||| ||||| Sbjct 25849 TTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||| ||||||||||| ||||| || || | | | |||| Sbjct 25801 AGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCCATCC 25742 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || |||||||| || || || ||||| | || | || ||||| || Sbjct 25741 TCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTATCC 25682 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||| || ||||| | |||| || | ||||| || | || || ||| Sbjct 25681 TGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGATAGTC 25622 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||| ||||| Sbjct 25621 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| |||||||||||||||||| | || | || Sbjct 25291 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCT 25232 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||| ||||||| || ||||| || | || | || |||||||| Sbjct 25231 TCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 25172 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 25171 TGAATCTTGGACTTGAC--AT--TGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGAT 25116 Query 34942 GGTCTTTCCCGTGA 34955 |||||| || |||| Sbjct 25115 GGTCTTGCCAGTGA 25102 >seq1435 Length=581194 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||| || | || || ||| |||||||| | |||| ||||||||| || || ||||| || Sbjct 375884 TCCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 375943 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| | || || |||||||| ||||||||||| || || || ||||| | || Sbjct 375944 GAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 376003 Query 34870 CACCCCCTCCTTGTC 34884 | || |||||||| Sbjct 376004 GATGCCTTCCTTGTC 376018 >seq640 Length=121632 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| |||| ||||| || ||||||| Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||||||||| | || | || |||||||| | || || ||||| || Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGAC--AT- 86653 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || | | ||||| || | ||| |||||||| ||||| || ||||| Sbjct 86652 -TGTCGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTG 86594 Query 34964 ACAAAG 34969 || ||| Sbjct 86593 ACGAAG 86588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325677355138529