Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3645 120 6e-22 >seq3645 Length=87304 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || ||||| |||||||| || || || || || || | || || Sbjct 25805 ACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTCCTCCC 25746 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || || || ||||| || | ||||| || || || || |||||||| Sbjct 25745 ATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTT 25686 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| | || ||||| |||||||| || | ||| || || | || || Sbjct 25685 ATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAGTGTGAT 25626 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | |||||| || || || ||||| Sbjct 25625 AGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 111 bits (122), Expect = 3e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | |||||| || |||||||| || || ||||| || | | | | || || Sbjct 26257 AGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGGCCATCC 26198 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || |||||||||||||| | | || || ||||| || || || || ||||| Sbjct 26197 TCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCTTTATCC 26138 Query 82719 TGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCG 82776 |||||| ||||| || || || ||||| || || || | || |||||||| || |||| Sbjct 26137 TGAATC-TTGCTCTTGACGTTATCAATTGTGTC-GGAGCTCTCAACTTCCAAGGTGATCG 26080 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || | ||||| ||||| |||||||| Sbjct 26079 TCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || ||||||| || || || || || || |||||| Sbjct 26046 TACCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCAC 25987 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || | || || || || ||||| | | || || ||||| | Sbjct 25986 TCAGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTG 25927 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||||| || || || |||||||| || | ||| | Sbjct 25926 GGATACCCTCCTTGTCTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGA 25867 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| ||||||||||| || || | |||||||| || || |||||| Sbjct 25866 CTTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| ||||| || || || || || || || ||| | | || Sbjct 25576 CGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCA 25517 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| | | || ||||||||||| || || || || Sbjct 25516 TCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTG 25457 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || ||||| | ||| || ||||| || || Sbjct 25456 TCCTGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATG 25397 Query 82776 GTCTTGCCTGTCAACGTCTTTACAA 82800 ||||| || || | ||||| |||| Sbjct 25396 GTCTTCCCAGTGAGGGTCTTGACAA 25372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981778252539049