Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1688 114 2e-20 seq842 100 4e-16 >seq1688 Length=109735 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| || || ||||| ||||| ||||||||| ||| || Sbjct 95393 GGCAAAGTCAGTGTGAAGCCCCTCATCGCGAGAGATAAGTTCGTTCGAGAAGGTCAGGCC 95334 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| |||||||||||||| | ||||||||| | ||| || || |||||| || Sbjct 95333 CGGCATAAGACCCCGCTTCTTAAGCCAGAAAATTGATGCAAAGGAACCGCTGAAGAAAAT 95274 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||||||| ||||| |||| ||| || | ||| |||| Sbjct 95273 ACCCTCCACAGCAGCGAAGGCAACGAGGCGTTGAGCGAAGG 95233 >seq842 Length=73752 Score = 100 bits (110), Expect = 4e-16 Identities = 187/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG-CTCGGAAACAT 179851 |||||||| |||| ||||||||| ||||| | | ||||| || || ||| | || Sbjct 25002 ACCATCGTGATCCTGATCCGTCATGATCATGATGTGCCCATAACGGAGACTCTTGCA-AT 25060 Query 179852 CTTGATAATCCTTACCTTGT--TGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTG 179909 | || || ||| | ||||| | ||| || | || |||||||| | | | ||| Sbjct 25061 CCTGGTAGTCCGT--CTTGTGCTTAAGCCCTATGAACTTCTTGATGTTCTGTATCTCCGC 25118 Query 179910 GTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGG 179969 |||| | || ||| | ||||| || ||||||||||| | ||| ||||| || || Sbjct 25119 GTTTTTCGAGATTTGGTCGACTGAGGCGTCTCGGACATTGAGAAGCTTACCACGAAGGGG 25178 Query 179970 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 180029 ||| || ||| | ||||| | ||||| || ||| | ||||| | ||| | ||| || Sbjct 25179 GAAAACGCCGAAAAGATCAGGCCCAACGACTGAGCGCCCAGCCATTGCCAAACCCTTGGC 25238 Query 180030 GGAATCACCCTCCGTCACGATGAGCGTACA 180059 ||||| || ||||||| ||| | |||||| Sbjct 25239 CGAATCTCCTTCCGTCAAGATCAACGTACA 25268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618405120857960