Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1688 120 4e-22 seq842 100 3e-16 >seq1688 Length=109735 Score = 120 bits (132), Expect = 4e-22 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | |||||||| || |||||||| || ||| | | |||| | | Sbjct 95171 AGTTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTC 95230 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | |||| ||| | || ||| | || || || ||| |||||||| |||||| |||| Sbjct 95231 -TACCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTT 95289 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||| ||| | |||| ||||| |||||||| ||||| ||||| || || |||||| Sbjct 95290 CCTT-TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCG 95348 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||||||||| || ||||| || ||| || ||||| Sbjct 95349 AACGAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGC 95392 >seq842 Length=73752 Score = 100 bits (110), Expect = 3e-16 Identities = 194/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGA 169231 || ||||| ||| ||| |||| ||| ||||||||||||||||| | ||||| || Sbjct 24988 CCTTTGATATGGCTACCATCGTGATCCTGATCCGTCATGATCATGATGTGCCCATAACGG 25047 Query 169232 AG-CTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATC 169290 || ||| | ||| || |||||| | || | ||| || | || |||||||| | Sbjct 25048 AGACTCTTGCA-ATCCTGGTAGTCCGTCTTGTGCTTAAGCCCTATGAACTTCTTGATGTT 25106 Query 169291 GTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTT 169350 | | ||| |||| | || || ||| ||||| || || ||||| | ||| Sbjct 25107 CTGTATCTCCGCGTTTTTCGAGATTTGGTCGACTGAGGCGTCTCGGACATTGAGAAGCTT 25166 Query 169351 CCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGC 169410 |||||||| ||||| || ||| | ||||| | |||||||| ||| | || || | ||| Sbjct 25167 ACCACGAAGGGGGAAAACGCCGAAAAGATCAGGCCCAACGACTGAGCGCCCAGCCATTGC 25226 Query 169411 GAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT 169454 | | ||| ||||| || || || || | ||| | |||||||| Sbjct 25227 CAAACCCTTGGCCGAATCTCCTTCCGTCAAGATCAACGTACATT 25270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232431652840