Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 120 4e-22
seq842 100 3e-16
>seq1688
Length=109735
Score = 120 bits (132), Expect = 4e-22
Identities = 164/224 (73%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792
|||||| || || | |||||||| || |||||||| || ||| | | |||| | |
Sbjct 95171 AGTTCCTTGCATCCGTAAGAAAGCAGACTGGGCTATCAAATGGATCCAAGACAAGAACTC 95230
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
| |||| ||| | || ||| | || || || ||| |||||||| |||||| ||||
Sbjct 95231 -TACCTTCGCTCAACGCCTCGTTGCCTTCGCTGCTGTGGAGGGTATTTTCTTCAGCGGTT 95289
Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911
|||| ||| | |||| ||||| |||||||| ||||| ||||| || || ||||||
Sbjct 95290 CCTT-TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCG 95348
Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| ||||||||||| || ||||| || ||| || |||||
Sbjct 95349 AACGAACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGC 95392
>seq842
Length=73752
Score = 100 bits (110), Expect = 3e-16
Identities = 194/284 (68%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGA 169231
|| ||||| ||| ||| |||| ||| ||||||||||||||||| | ||||| ||
Sbjct 24988 CCTTTGATATGGCTACCATCGTGATCCTGATCCGTCATGATCATGATGTGCCCATAACGG 25047
Query 169232 AG-CTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATC 169290
|| ||| | ||| || |||||| | || | ||| || | || |||||||| |
Sbjct 25048 AGACTCTTGCA-ATCCTGGTAGTCCGTCTTGTGCTTAAGCCCTATGAACTTCTTGATGTT 25106
Query 169291 GTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTT 169350
| | ||| |||| | || || ||| ||||| || || ||||| | |||
Sbjct 25107 CTGTATCTCCGCGTTTTTCGAGATTTGGTCGACTGAGGCGTCTCGGACATTGAGAAGCTT 25166
Query 169351 CCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGC 169410
|||||||| ||||| || ||| | ||||| | |||||||| ||| | || || | |||
Sbjct 25167 ACCACGAAGGGGGAAAACGCCGAAAAGATCAGGCCCAACGACTGAGCGCCCAGCCATTGC 25226
Query 169411 GAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT 169454
| | ||| ||||| || || || || | ||| | ||||||||
Sbjct 25227 CAAACCCTTGGCCGAATCTCCTTCCGTCAAGATCAACGTACATT 25270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583232431652840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |