Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3190 165 9e-36 seq1688 86.0 7e-12 >seq3190 Length=146739 Score = 165 bits (182), Expect = 9e-36 Identities = 380/565 (67%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||| || ||| |||||| || || ||| || || || ||| |||| || ||| ||| Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248 Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475 || ||||| || | ||||| | || || ||| |||| || | ||| || | Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308 Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 || ||||||||||| ||||| || || || || |||| ||| |||||| || || Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG-TCGG 79594 |||| ||| || | || ||||||||||| || |||||||| ||||| || ||| ||| Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA--GTGGAT 79652 ||| ||||| || ||| || | ||| | || || | | ||| | || | Sbjct 23429 GGAC-CCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGA--TACGATGAATGTTCAG 23485 Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 || ||||| || | | ||| ||||| | ||||| ||| | || |||||||| || Sbjct 23486 CCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACC 23545 Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT-TCG 79771 || || ||| || ||||| | || |||||||| | || |||| |||||| | Sbjct 23546 TTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGT-GGTTGTGGAG 23604 Query 79772 TACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGT 79831 |||| ||||||||||| || || | ||||| ||||| | ||||| ||| |||| | Sbjct 23605 TACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTAT 23664 Query 79832 ACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGA 79891 | ||||| ||| | || ||| || || |||||| || ||||| ||||| | | Sbjct 23665 AGGTCTCAAGGACCTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCA 23724 Query 79892 GGTACTGGGGCGTCTCGCCGACATT 79916 || || ||| |||| |||| || Sbjct 23725 TGTGTTGAGGCCTCTCAGCGACCTT 23749 Score = 161 bits (178), Expect = 1e-34 Identities = 377/561 (67%), Gaps = 16/561 (3%) Strand=Plus/Minus Query 19096 TGAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC 19155 ||||| |||||| || | | ||||| ||||| || |||||| || || ||| || Sbjct 23741 TGAGAGGCCTCAACACATGATAATGCGTGTCGCTGTTGGCATCTGGGGAGATGACGTCGA 23682 Query 19156 GCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGAC 19215 | |||| ||||| || | || ||| || || | ||||| ||||| | || || Sbjct 23681 GAAGGTCCTTGAGACCTATAATCTTATGTCTCAAAAATATTTCACCCACGCCTCCCCAAC 23622 Query 19216 CCTTTTCAACGCCGGTACGA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGA 19274 || |||||||| ||||| |||||| ||| || | || ||||| || | |||| Sbjct 23621 TCTCTTCAACGCTGGTACTCCACAACCA-CAGTTGGCATCGTGCTTCCTCGTTGACATGA 23563 Query 19275 AGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGT 19334 | || ||||||||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 23562 AAGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACCTGCGCTCTGATCTCGAAGA 23503 Query 19335 GGTCCGGGGGTATCGGGATCCAC--TGCTCGAATATCCGGTCGA----GTGGTACACGAA 19388 | | || || || ||| | || | ||| |||||| | | || ||||| Sbjct 23502 CGGCGGGAGGCATTGGGCTGAACATTCATCG--TATCCGAGCCACCGGGTCGTACA---- 23449 Query 19389 TCAATGGGACGAACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAAC 19447 | || || ||||| || ||| ||| || || || |||||||| |||||||||||| Sbjct 23448 TTGCCGGCACAAACGG-GTCCTCGAACGGGATTGTGCCTATGCTCCGTGTCTTCAACAAC 23390 Query 19448 ACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTC 19507 || || || || ||| |||| || || ||| || || |||| || || ||||| Sbjct 23389 ACCGCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTTTGCTATTTACCTT 23330 Query 19508 GAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAG 19567 ||||| |||||||| || ||| | || || | || ||||| ||| || || | ||| Sbjct 23329 GAGCCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGGAAGGAG 23270 Query 19568 GAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAG 19627 || | ||| ||||| || ||| ||| | |||| || || || || ||| || Sbjct 23269 GAAGTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATGAAGCGT 23210 Query 19628 GTTGAGAAGGACGAAGAATGG 19648 || |||||| ||| |||||| Sbjct 23209 GTCGAGAAGAACGGCGAATGG 23189 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 ||||| | ||||||||| || ||||||||||| |||||| || | |||||| || Sbjct 21951 GTTCGGAGATAGTACATCCCAGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTG 22010 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | ||| ||| | |||| || | | ||||||||| ||||| |||||||||||| Sbjct 22011 GTGATCTTCCCCATTGTTGGGTCCTTTAGGTGGATGTTGAGAGACTGAGACTGGTCGATG 22070 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 |||||||||| ||||| ||||| | | | || || | ||||||||||| ||| Sbjct 22071 AACGCACCGCGATCGGCAGCCATCTGTACAATCGTTCGCTGTGAAATCTCCCAGACTGTC 22130 Query 78370 CGGTAAATGGCCTT 78383 ||| | ||||| Sbjct 22131 TTGTATAAAGCCTT 22144 Score = 86.0 bits (94), Expect = 7e-12 Identities = 296/448 (66%), Gaps = 29/448 (6%) Strand=Plus/Minus Query 20384 TTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GC 20442 ||||| |||||||||||||| |||||| ||| || ||| | || ||| || || Sbjct 22384 TTGCTTGTCGCGCCCATGCCCACCGCCAGTACCAGTCAAATCCTTGGTTTCAATGAATGC 22325 Query 20443 TTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCAT 20502 ||| ||||| ||||| | ||||| || | ||||||| |||||| || |||||| | Sbjct 22324 TTT-GAGCCCTACACTTCGAACATATATTCGCGTCGTGTACTGGCAGGGGAGTTCCAAGT 22266 Query 20503 GGTAAACAAGCACCTGGTCCGCGACTTGCAGAA--GATCGATATG------TGGTCGCCC 20554 || ||| ||| | || |||| ||| | | |||||| ||||| | Sbjct 22265 TGTCAAC-----CCTTG---GCTACTTAAAGACTTGGTGGATATGGGCCTTTGGTCTGAC 22214 Query 20555 AAAATTAAGAAT-GAA--ATTGTCCGAGCCGGCGGGAGCGTCCAGGC-ATTGG--ATATC 20608 || || || || | | |||| |||| ||| || || ||| ||| | || Sbjct 22213 AACATGAAAAACCGCATCATTG-CCGA--CGGTGGCTCGGTTCAGAATATTCCCAACATA 22157 Query 20609 CCC-CAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCAT 20667 || |||| | |||||| | |||| ||| || ||||| || ||||| | || | Sbjct 22156 CCTGCAGA-CATCAAGGCTTTATACAAGACAGTCTGGGAGATTTCACAGCGAACGATTGT 22098 Query 20668 CGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCAT 20727 | ||||| ||||||||||| || | |||||||||||| ||||| ||||| || | | Sbjct 22097 ACAGATGGCTGCCGATCGCGGTGCGTTCATCGACCAGTCTCAGTCTCTCAACATCCACCT 22038 Query 20728 GGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCT 20787 || | || | ||| |||| | | | |||||| | |||||| | || || Sbjct 22037 AAAGGACCCAACAATGGGGAAGATCACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCT 21978 Query 20788 CAAGACGGGCATGTACTATCTGCGGACC 20815 |||||| || ||||||||||| || ||| Sbjct 21977 CAAGACTGGGATGTACTATCTCCGAACC 21950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 79040 AAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACC 79098 |||| ||||| ||| ||||| |||| ||||| || || ||| || || || | | Sbjct 22816 AAGTTGGTAGTGCA-AGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGTATAC 22874 Query 79099 TCGATGATTTCTGTGCACAAATTAGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||| ||||| ||||||||||| || | || || || || | |||||||||||||| Sbjct 22875 TCGATAATTTCGGTGCACAAATTCGAGCTAC-GAATTGTCCCAAGATTCTTCTGGTTGCT 22933 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||| || ||||||||||| |||| | || | |||||||| Sbjct 22934 CTTGCGGTTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTC 22981 >seq1688 Length=109735 Score = 86.0 bits (94), Expect = 7e-12 Identities = 304/462 (66%), Gaps = 30/462 (6%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 || || ||||| ||| | || || || ||| ||||| || || |||||| || || || Sbjct 95235 TTCGCTCAACGCCTCGTTGCCTTCGC-TGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTT 95293 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | ||||||||||| || ||||| || || ||||||||||||| ||||| ||||| Sbjct 95294 TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGA 95353 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC 60150 || || || || || ||||| || || || ||||| || | |||| || || | Sbjct 95354 ACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGC-CTGCCTCCTCTTCTCCCATC 95412 Query 60151 TATTGGAAAAATGCCCTTCCA---AGGATATTCACAAGATTGTTCAGTGGGCTTGTGA-A 60206 || | || | || ||| ||| | |||| | || ||| || | ||| | Sbjct 95413 TA---AACAACCGTCCCACCAAGCAGGCTGTTCAGGACGTT-ATCACTGAGGCTGTCACT 95468 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||| ||||| | || || || || || ||| || | |||||| |||| | Sbjct 95469 ATCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCT 95528 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAG-TTTGG------ 60319 |||| ||| || || | ||||| || || || || | || || | | | Sbjct 95529 TTGATGAAGCAATATATCGAATTTGTGGCCGATCG--TCTTCTCCTAGCTCTAGGCAACC 95586 Query 60320 AGAAGGAC--CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTG 60377 ||||| || ||| | || || ||||| ||||||| |||||| | || || ||| Sbjct 95587 AGAAGTACTACAACT--CGTCG-----AACCCGTTCGACTTCATGGAGTCGATATCATTG 95639 Query 60378 GAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 | || |||||||||||||| |||||||| || || || ||| Sbjct 95640 GCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTAT 95681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548498121125040