Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 165 9e-36
seq1688 86.0 7e-12
>seq3190
Length=146739
Score = 165 bits (182), Expect = 9e-36
Identities = 380/565 (67%), Gaps = 8/565 (1%)
Strand=Plus/Plus
Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415
||| || ||| |||||| || || ||| || || || ||| |||| || ||| |||
Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248
Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475
|| ||||| || | ||||| | || || ||| |||| || | ||| || |
Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308
Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535
|| ||||||||||| ||||| || || || || |||| ||| |||||| || ||
Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368
Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG-TCGG 79594
|||| ||| || | || ||||||||||| || |||||||| ||||| || ||| |||
Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428
Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA--GTGGAT 79652
||| ||||| || ||| || | ||| | || || | | ||| | || |
Sbjct 23429 GGAC-CCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGA--TACGATGAATGTTCAG 23485
Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712
|| ||||| || | | ||| ||||| | ||||| ||| | || |||||||| ||
Sbjct 23486 CCCAATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACC 23545
Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT-TCG 79771
|| || ||| || ||||| | || |||||||| | || |||| |||||| |
Sbjct 23546 TTCAATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGT-GGTTGTGGAG 23604
Query 79772 TACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGT 79831
|||| ||||||||||| || || | ||||| ||||| | ||||| ||| |||| |
Sbjct 23605 TACCAGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTAT 23664
Query 79832 ACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGA 79891
| ||||| ||| | || ||| || || |||||| || ||||| ||||| | |
Sbjct 23665 AGGTCTCAAGGACCTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCA 23724
Query 79892 GGTACTGGGGCGTCTCGCCGACATT 79916
|| || ||| |||| |||| ||
Sbjct 23725 TGTGTTGAGGCCTCTCAGCGACCTT 23749
Score = 161 bits (178), Expect = 1e-34
Identities = 377/561 (67%), Gaps = 16/561 (3%)
Strand=Plus/Minus
Query 19096 TGAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC 19155
||||| |||||| || | | ||||| ||||| || |||||| || || ||| ||
Sbjct 23741 TGAGAGGCCTCAACACATGATAATGCGTGTCGCTGTTGGCATCTGGGGAGATGACGTCGA 23682
Query 19156 GCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGAC 19215
| |||| ||||| || | || ||| || || | ||||| ||||| | || ||
Sbjct 23681 GAAGGTCCTTGAGACCTATAATCTTATGTCTCAAAAATATTTCACCCACGCCTCCCCAAC 23622
Query 19216 CCTTTTCAACGCCGGTACGA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGA 19274
|| |||||||| ||||| |||||| ||| || | || ||||| || | ||||
Sbjct 23621 TCTCTTCAACGCTGGTACTCCACAACCA-CAGTTGGCATCGTGCTTCCTCGTTGACATGA 23563
Query 19275 AGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGT 19334
| || ||||||||||| || |||||||| || | ||| ||||| | ||||| |||
Sbjct 23562 AAGAGGACAGCATTGAAGGTATCTACGACACCTTGAAGACCTGCGCTCTGATCTCGAAGA 23503
Query 19335 GGTCCGGGGGTATCGGGATCCAC--TGCTCGAATATCCGGTCGA----GTGGTACACGAA 19388
| | || || || ||| | || | ||| |||||| | | || |||||
Sbjct 23502 CGGCGGGAGGCATTGGGCTGAACATTCATCG--TATCCGAGCCACCGGGTCGTACA---- 23449
Query 19389 TCAATGGGACGAACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAAC 19447
| || || ||||| || ||| ||| || || || |||||||| ||||||||||||
Sbjct 23448 TTGCCGGCACAAACGG-GTCCTCGAACGGGATTGTGCCTATGCTCCGTGTCTTCAACAAC 23390
Query 19448 ACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTC 19507
|| || || || ||| |||| || || ||| || || |||| || || |||||
Sbjct 23389 ACCGCGAGATATGTCGACCAAGGTGGTAACAAGCGGCCAGGTGCGTTTGCTATTTACCTT 23330
Query 19508 GAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAG 19567
||||| |||||||| || ||| | || || | || ||||| ||| || || | |||
Sbjct 23329 GAGCCTTGGCACGCCGATGTCTTCGAGTTTTTGGACTTGCGCAAGAATCACGGGAAGGAG 23270
Query 19568 GAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAG 19627
|| | ||| ||||| || ||| ||| | |||| || || || || ||| ||
Sbjct 23269 GAAGTCCGCGCGCGCGATCTATTCTTGGCTCTTTGGACCCCCGATCTTTTTATGAAGCGT 23210
Query 19628 GTTGAGAAGGACGAAGAATGG 19648
|| |||||| ||| ||||||
Sbjct 23209 GTCGAGAAGAACGGCGAATGG 23189
Score = 102 bits (112), Expect = 9e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
||||| | ||||||||| || ||||||||||| |||||| || | |||||| ||
Sbjct 21951 GTTCGGAGATAGTACATCCCAGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTG 22010
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | ||| ||| | |||| || | | ||||||||| ||||| ||||||||||||
Sbjct 22011 GTGATCTTCCCCATTGTTGGGTCCTTTAGGTGGATGTTGAGAGACTGAGACTGGTCGATG 22070
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
|||||||||| ||||| ||||| | | | || || | ||||||||||| |||
Sbjct 22071 AACGCACCGCGATCGGCAGCCATCTGTACAATCGTTCGCTGTGAAATCTCCCAGACTGTC 22130
Query 78370 CGGTAAATGGCCTT 78383
||| | |||||
Sbjct 22131 TTGTATAAAGCCTT 22144
Score = 86.0 bits (94), Expect = 7e-12
Identities = 296/448 (66%), Gaps = 29/448 (6%)
Strand=Plus/Minus
Query 20384 TTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GC 20442
||||| |||||||||||||| |||||| ||| || ||| | || ||| || ||
Sbjct 22384 TTGCTTGTCGCGCCCATGCCCACCGCCAGTACCAGTCAAATCCTTGGTTTCAATGAATGC 22325
Query 20443 TTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCAT 20502
||| ||||| ||||| | ||||| || | ||||||| |||||| || |||||| |
Sbjct 22324 TTT-GAGCCCTACACTTCGAACATATATTCGCGTCGTGTACTGGCAGGGGAGTTCCAAGT 22266
Query 20503 GGTAAACAAGCACCTGGTCCGCGACTTGCAGAA--GATCGATATG------TGGTCGCCC 20554
|| ||| ||| | || |||| ||| | | |||||| ||||| |
Sbjct 22265 TGTCAAC-----CCTTG---GCTACTTAAAGACTTGGTGGATATGGGCCTTTGGTCTGAC 22214
Query 20555 AAAATTAAGAAT-GAA--ATTGTCCGAGCCGGCGGGAGCGTCCAGGC-ATTGG--ATATC 20608
|| || || || | | |||| |||| ||| || || ||| ||| | ||
Sbjct 22213 AACATGAAAAACCGCATCATTG-CCGA--CGGTGGCTCGGTTCAGAATATTCCCAACATA 22157
Query 20609 CCC-CAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCAT 20667
|| |||| | |||||| | |||| ||| || ||||| || ||||| | || |
Sbjct 22156 CCTGCAGA-CATCAAGGCTTTATACAAGACAGTCTGGGAGATTTCACAGCGAACGATTGT 22098
Query 20668 CGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCAT 20727
| ||||| ||||||||||| || | |||||||||||| ||||| ||||| || | |
Sbjct 22097 ACAGATGGCTGCCGATCGCGGTGCGTTCATCGACCAGTCTCAGTCTCTCAACATCCACCT 22038
Query 20728 GGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCT 20787
|| | || | ||| |||| | | | |||||| | |||||| | || ||
Sbjct 22037 AAAGGACCCAACAATGGGGAAGATCACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCT 21978
Query 20788 CAAGACGGGCATGTACTATCTGCGGACC 20815
|||||| || ||||||||||| || |||
Sbjct 21977 CAAGACTGGGATGTACTATCTCCGAACC 21950
Score = 86.0 bits (94), Expect = 7e-12
Identities = 123/168 (73%), Gaps = 4/168 (2%)
Strand=Plus/Plus
Query 79040 AAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACC 79098
|||| ||||| ||| ||||| |||| ||||| || || ||| || || || | |
Sbjct 22816 AAGTTGGTAGTGCA-AGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGTATAC 22874
Query 79099 TCGATGATTTCTGTGCACAAATTAGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||||| ||||| ||||||||||| || | || || || || | ||||||||||||||
Sbjct 22875 TCGATAATTTCGGTGCACAAATTCGAGCTAC-GAATTGTCCCAAGATTCTTCTGGTTGCT 22933
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||| ||| || ||||||||||| |||| | || | ||||||||
Sbjct 22934 CTTGCGGTTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTC 22981
>seq1688
Length=109735
Score = 86.0 bits (94), Expect = 7e-12
Identities = 304/462 (66%), Gaps = 30/462 (6%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
|| || ||||| ||| | || || || ||| ||||| || || |||||| || || ||
Sbjct 95235 TTCGCTCAACGCCTCGTTGCCTTCGC-TGCTGTGGAGGGTATTTTCTTCAGCGGTTCCTT 95293
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| ||||||||||| || ||||| || || ||||||||||||| ||||| |||||
Sbjct 95294 TGCATCAATTTTCTGGCTTAAGAAGCGGGGTCTTATGCCGGGCCTGACCTTCTCGAACGA 95353
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC 60150
|| || || || || ||||| || || || ||||| || | |||| || || |
Sbjct 95354 ACTTATCTCTCGCGATGAGGGGCTTCACACTGACTTTGC-CTGCCTCCTCTTCTCCCATC 95412
Query 60151 TATTGGAAAAATGCCCTTCCA---AGGATATTCACAAGATTGTTCAGTGGGCTTGTGA-A 60206
|| | || | || ||| ||| | |||| | || ||| || | ||| |
Sbjct 95413 TA---AACAACCGTCCCACCAAGCAGGCTGTTCAGGACGTT-ATCACTGAGGCTGTCACT 95468
Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266
| ||| ||||| | || || || || || ||| || | |||||| |||| |
Sbjct 95469 ATCGAGCAAGAGTTTCTAACGGAGGCTCTGCCTTGCGCTCTGCTGGGTATGAACGCCGCT 95528
Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAG-TTTGG------ 60319
|||| ||| || || | ||||| || || || || | || || | | |
Sbjct 95529 TTGATGAAGCAATATATCGAATTTGTGGCCGATCG--TCTTCTCCTAGCTCTAGGCAACC 95586
Query 60320 AGAAGGAC--CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTG 60377
||||| || ||| | || || ||||| ||||||| |||||| | || || |||
Sbjct 95587 AGAAGTACTACAACT--CGTCG-----AACCCGTTCGACTTCATGGAGTCGATATCATTG 95639
Query 60378 GAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419
| || |||||||||||||| |||||||| || || || |||
Sbjct 95640 GCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTAT 95681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548498121125040
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