Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3645 123 2e-23 >seq3645 Length=87304 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| |||| || || || || ||| |||| Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || || || ||||| || ||||| || ||| Sbjct 25650 GACACGATTGACAATGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCAA 25709 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| |||| || | ||| ||||||| |||||| Sbjct 25710 CAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAAC 25769 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| || ||||| ||| Sbjct 25770 ATTCAGAAAGAGTCTACC 25787 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || || ||| | || || || ||||| ||| | || Sbjct 25818 ATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATCA 25877 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || ||| ||||||||||| || || || ||||| || || Sbjct 25878 GACACGATTGACAACGTTAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAG 25937 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || || ||||| ||| | ||| | ||||||||| Sbjct 25938 CAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACACTGAGTGATTACAAC 25997 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || || ||||| | || |||| ||||| || Sbjct 25998 ATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGGTAT 26047 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || || ||||| ||||| | || ||| | || || | ||||| Sbjct 25104 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCAGACACCATCGACAATGTCAAGTCC 25163 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| |||||||| || || ||||| ||||| || || | ||||||||| Sbjct 25164 AAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCAAA 25223 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | |||||| | |||| | || || || ||||| || |||||||| || | || Sbjct 25224 CAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCCAC 25283 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | ||||| ||||| Sbjct 25284 TTGGTCCTACGTCTTCGGGGAGGCAT 25309 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || || | ||||| || ||| Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCC 26105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| || ||||| || || ||||| || || Sbjct 26106 GACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAG 26165 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || |||| || | ||| | || ||||||||| Sbjct 26166 CAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAAC 26225 Query 27168 ATTCAAAAGGAG 27179 || || || ||| Sbjct 26226 ATCCAGAAAGAG 26237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434897246656320