Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 123 2e-23
>seq3645
Length=87304
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || |||||| |||| || || || || ||| ||||
Sbjct 25590 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACTATCACACTCGAGGTCGAATCGTCA 25649
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | ||||| || || || || || ||||| || ||||| || |||
Sbjct 25650 GACACGATTGACAATGTCAAGTCGAAGATACAGGATAAGGAAGGTATCCCACCGGACCAA 25709
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| ||| |||| || | ||| ||||||| ||||||
Sbjct 25710 CAGCGTCTCATCTTCGCAGGCAAGCAACTGGAGGATGGGAGGACACTTTCCGACTACAAC 25769
Query 27168 ATTCAAAAGGAGTCGACC 27185
||||| || ||||| |||
Sbjct 25770 ATTCAGAAAGAGTCTACC 25787
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || ||||| || || || || ||| | || || || ||||| ||| | ||
Sbjct 25818 ATGCAAATCTTCGTAAAGACCCTTACGGGAAAGACGATAACGCTGGAAGTCGAATCATCA 25877
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | || || ||| ||||||||||| || || || ||||| || ||
Sbjct 25878 GACACGATTGACAACGTTAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAG 25937
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||| || || || ||||| ||| | ||| | |||||||||
Sbjct 25938 CAGCGGTTGATCTTCGCGGGTAAGCAGTTGGAGGACGGCCGGACACTGAGTGATTACAAC 25997
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||||||| || || || ||||| | || |||| ||||| ||
Sbjct 25998 ATTCAAAAGGAGAGCACGTTGCACTTGGTCCTTCGGCTGCGCGGTGGTAT 26047
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
|| |||||| | || || ||||| ||||| | || ||| | || || | |||||
Sbjct 25104 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCAGACACCATCGACAATGTCAAGTCC 25163
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||| ||||| |||||||| || || ||||| ||||| || || | |||||||||
Sbjct 25164 AAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTTGCCGGCAAA 25223
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | |||||| | |||| | || || || ||||| || |||||||| || | ||
Sbjct 25224 CAGCTCGAAGACGGCCGGACCCTATCGGACTATAACATCCAGAAGGAGTCCACTCTCCAC 25283
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| | ||| | ||||| |||||
Sbjct 25284 TTGGTCCTACGTCTTCGGGGAGGCAT 25309
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||| || || ||| | || || | ||||| || |||
Sbjct 26046 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCC 26105
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| || ||||| || ||||| || || ||||| || ||
Sbjct 26106 GACACAATTGATAACGTCAAGAGCAAGATTCAGGATAAAGAGGGTATTCCACCAGACCAG 26165
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | || || || || |||| || | ||| | || |||||||||
Sbjct 26166 CAGCGCTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGGACTTTGTCGGATTACAAC 26225
Query 27168 ATTCAAAAGGAG 27179
|| || || |||
Sbjct 26226 ATCCAGAAAGAG 26237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434897246656320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |