Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq98 93.3 4e-14 >seq98 Length=790089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 202/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTC 34385 ||||||||||||| | || || || || || || || | ||| ||| |||| Sbjct 519778 AAGATCTGGGACGGCAATGGCTCGCGTGAGTTCCTTGATAGTGTCGGCCTTTCTCATC-- 519835 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | || | ||||||| | || || |||||||||||||||||| | || || || ||||||| Sbjct 519836 GAGATGTGGGCGACCTAGGTCCTGTCTACGGGTTCCAGTGGCGGCATTTCGGTGCGGAGT 519895 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 | || || |||||| | || ||| | || || || | || |||||| | | || || Sbjct 519896 A-CGTGGATGCGAAGACAGATTATACTGGGCAAGGGGTCGATCAGCTGGCGGAGGTTATT 519954 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 |||| ||||| || || |||| | || ||| | | |||| |||||||| | Sbjct 519955 GACAAGCTGAAGAACAAGCCGTATGATCGGAGAATCATCCTCAGCGCTTGGAACCCAGCG 520014 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618 || || |||||| | || ||||| |||| | ||| |||||||||||| Sbjct 520015 GACCTAAAGAAGATGGCATTGCCACCGTGTCACA-TGTTTGCACAATTCTACGTC 520068 Score = 93.3 bits (102), Expect = 4e-14 Identities = 202/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 |||||||||||| ||| | |||| ||||| || | |||||| || ||| | Sbjct 520068 GACGTAGAATTGTGCAAACA-TGTGACACGGTGGCAATGCCATCTTCTTTAGGTCCGCTG 520010 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 ||||||| |||| | | ||| || | |||| || || ||||| |||| || | Sbjct 520009 GGTTCCAAGCGCTGAGGATGATTCTCCGATCATACGGCTTGTTCTTCAGCTTGTCAATAA 519950 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904 | | | |||||| || | || || || | ||| || | |||||| || || |||||| Sbjct 519949 CCTCCGCCAGCTGATCGACCCCTTGCCCAGTATAATCTGTCTTCGCATCCACG-TACTCC 519891 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || || || || | |||||||||||||||||| || || | ||||||| | || | ||| Sbjct 519890 GCACCGAAATGCCGCCACTGGAACCCGTAGACAGGACCTAGGTCGCCCACATCTC--GAT 519833 Query 6965 GGGAACCCCCG--CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| | || || || || || || || | ||||||||||||| Sbjct 519832 GAGAAAGGCCGACACTATCAAGGAACTCACGCGAGCCATTGCCGTCCCAGATCTT 519778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448240597637520