Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3645 176 1e-38 seq640 145 2e-29 seq1435 98.7 2e-15 >seq3645 Length=87304 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| || || |||||||| || ||||| || || | ||| || Sbjct 25811 ACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGT 25752 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||| ||||| ||||||||||||||||| || || |||||||| || || | || Sbjct 25751 CCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACC 25692 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || || || || || ||||| || ||| |||||||| Sbjct 25691 TTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAG 25632 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | ||||| Sbjct 25631 TGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || || ||||| || ||| |||||| |||||||| ||||||| | || Sbjct 26267 ACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGT 26208 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || ||||| ||||||||||| || || ||||| | ||| || ||||| || |||| || Sbjct 26207 CCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACC 26148 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || || ||||| ||||| || ||||| || || ||||| ||||| ||||| || | Sbjct 26147 CTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAA 26088 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| || |||||||| ||||| | |||||| Sbjct 26087 GGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 161 bits (178), Expect = 2e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | |||||| | ||| ||||||||||| || ||||||||||| |||| |||||| Sbjct 25300 CGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTC 25241 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| ||||| ||||| || ||||| | ||| || || || ||||||| ||| Sbjct 25240 CGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCT 25181 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || ||||||||||| || || ||||| || Sbjct 25180 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGG 25121 Query 211074 GTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 25120 GTGATGGTCTTGCCAGTGA 25102 Score = 143 bits (158), Expect = 6e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||| || ||||||||||| || || | || || | ||||| Sbjct 25573 AGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCC 25514 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | || || || || ||||||| || || |||||| Sbjct 25513 TCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCC 25454 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| || || ||| ||||| | ||||| ||| Sbjct 25453 TGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTC 25394 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 || || ||||| ||||| |||| Sbjct 25393 TTCCCAGTGAGGGTCTTGACAA 25372 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||| ||| ||||| ||||| ||||| || |||| || || Sbjct 26029 AGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCC 25970 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | || || ||||| || || | || |||||||| Sbjct 25969 TCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 25910 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || ||||| || || ||||| || ||| || || || || |||||| Sbjct 25909 TGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTC 25850 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || |||||||| || | |||||| Sbjct 25849 TTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 >seq640 Length=121632 Score = 145 bits (160), Expect = 2e-29 Identities = 142/182 (78%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| |||| |||||||||||||||||| Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||| ||||| || || | |||||||||||||||||||| || || || ||| Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| ||| ||| |||||||| ||||| ||||| ||||| |||||||| || Sbjct 86647 ATGGTGTC---GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACG 86591 Query 211104 AA 211105 || Sbjct 86590 AA 86589 >seq1435 Length=581194 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||| || || || | ||||| | || ||| Sbjct 375900 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCGTCT 375959 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || || |||||||| |||||||| ||||| |||||||| || || | ||||||||||| Sbjct 375960 TCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 376018 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||| | |||||||| ||| ||||| ||||||||||| || ||| |||||||| || Sbjct 376082 CTTGCCTTGGATCTTGGATTTGACGTTGTCGATGGTGTCGGACGATTCCACCTCGAGGGT 376141 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||||||| |||||||| ||||| || Sbjct 376142 GATCGTCTTGCCCGTGAGGGTCTTGAC 376168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159094212288215