Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 176 1e-38
seq640 145 2e-29
seq1435 98.7 2e-15
>seq3645
Length=87304
Score = 176 bits (194), Expect = 1e-38
Identities = 172/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||||||||| || || |||||||| || ||||| || || | ||| ||
Sbjct 25811 ACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGT 25752
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
||| ||||| ||||| ||||||||||||||||| || || |||||||| || || | ||
Sbjct 25751 CCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACC 25692
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| ||||| ||||| || || || || || ||||| || ||| ||||||||
Sbjct 25691 TTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAG 25632
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || ||||| ||||| || || | |||||
Sbjct 25631 TGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| || || || || ||||| || ||| |||||| |||||||| ||||||| | ||
Sbjct 26267 ACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGT 26208
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| ||||| ||||||||||| || || ||||| | ||| || ||||| || |||| ||
Sbjct 26207 CCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACC 26148
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| || ||||| ||||| || ||||| || || ||||| ||||| ||||| || |
Sbjct 26147 CTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAA 26088
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||||||||| || |||||||| ||||| | ||||||
Sbjct 26087 GGTGATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 161 bits (178), Expect = 2e-34
Identities = 155/199 (78%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | |||||| | ||| ||||||||||| || ||||||||||| |||| ||||||
Sbjct 25300 CGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTC 25241
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||| ||||| ||||| || ||||| | ||| || || || ||||||| |||
Sbjct 25240 CGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCT 25181
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || || || ||||||||||| || || ||||| ||
Sbjct 25180 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGG 25121
Query 211074 GTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 25120 GTGATGGTCTTGCCAGTGA 25102
Score = 143 bits (158), Expect = 6e-29
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| |||||||| || ||||||||||| || || | || || | |||||
Sbjct 25573 AGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCC 25514
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| | || || || || ||||||| || || ||||||
Sbjct 25513 TCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCC 25454
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||| || || ||| ||||| | ||||| |||
Sbjct 25453 TGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTC 25394
Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104
|| || ||||| ||||| ||||
Sbjct 25393 TTCCCAGTGAGGGTCTTGACAA 25372
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| | ||| ||| ||||| ||||| ||||| || |||| || ||
Sbjct 26029 AGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCC 25970
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || |||||||| | || || ||||| || || | || ||||||||
Sbjct 25969 TCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 25910
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| || ||||| || || ||||| || ||| || || || || ||||||
Sbjct 25909 TGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTC 25850
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|||||||| || |||||||| || | ||||||
Sbjct 25849 TTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817
>seq640
Length=121632
Score = 145 bits (160), Expect = 2e-29
Identities = 142/182 (78%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||| || | ||||| |||| ||||||||||||||||||
Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||| ||||| || || | |||||||||||||||||||| || || || |||
Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648
Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103
|||||||| ||| ||| |||||||| ||||| ||||| ||||| |||||||| ||
Sbjct 86647 ATGGTGTC---GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACG 86591
Query 211104 AA 211105
||
Sbjct 86590 AA 86589
>seq1435
Length=581194
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || ||||| || || || | ||||| | || |||
Sbjct 375900 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCGTCT 375959
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| || |||||||| |||||||| ||||| |||||||| || || | |||||||||||
Sbjct 375960 TCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 376018
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
|||| | |||||||| ||| ||||| ||||||||||| || ||| |||||||| ||
Sbjct 376082 CTTGCCTTGGATCTTGGATTTGACGTTGTCGATGGTGTCGGACGATTCCACCTCGAGGGT 376141
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||||||| |||||||| ||||| ||
Sbjct 376142 GATCGTCTTGCCCGTGAGGGTCTTGAC 376168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159094212288215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |