Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 150 4e-31
seq1941 149 1e-30
seq2947 131 4e-25
seq3243 113 1e-19
seq2683 109 1e-18
seq1490 107 5e-18
seq640 107 5e-18
seq1435 98.7 2e-15
seq98 86.0 1e-11
>seq3645
Length=87304
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||||||||||||||| ||||||| ||||| |||| | ||| | ||||||
Sbjct 25573 AGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCC 25514
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||||||||| |||||||| | || || || || || ||||| || || |||||
Sbjct 25513 TCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCC 25454
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| |||||||| || || | |||||| || || ||||| |||
Sbjct 25453 TGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTC 25394
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 25393 TTCCCAGT 25386
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||||||||||| || || ||||| || | ||||| |||| | ||
Sbjct 25811 ACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGT 25752
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|||||||| || || ||||| || |||||||| || || |||||||| || || |||||
Sbjct 25751 CCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACC 25692
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| || || ||||| ||| ||| || || |||||||| | ||| || || |
Sbjct 25691 TTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAG 25632
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | ||||||
Sbjct 25631 TGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 122 bits (134), Expect = 2e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || || || || ||||| || ||| ||||| |||| |||||||| | ||||||
Sbjct 26267 ACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGT 26208
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| | || || ||||| || ||||||||
Sbjct 26207 CCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACC 26148
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| || || || ||||| ||| || || || ||||| ||| | || || || ||
Sbjct 26147 CTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAA 26088
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||||||||| || || | ||| ||
Sbjct 26087 GGTGATCGTCTTTCCAGTAAGAGTCTT 26061
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||||| | |||||||||||| || || |||| || || || | | ||
Sbjct 25300 CGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTC 25241
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| ||||| || || || ||||| | || || || || || ||||| |||
Sbjct 25240 CGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCT 25181
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || ||||| ||| ||| |||||||||||||| | ||||| || |
Sbjct 25180 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGG 25121
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 25120 GTGATGGTCTTGCCAGT 25104
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| | ||| || ||||| | |||||||| || || | || ||
Sbjct 26029 AGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCC 25970
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| || |||||||| | || || ||||| || || ||||| |||||||||
Sbjct 25969 TCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 25910
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| |||||| ||| || || || |||||||| | ||| || || | ||| ||||||
Sbjct 25909 TGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTC 25850
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| ||||| | || |||| ||| | |||||||
Sbjct 25849 TTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817
>seq1941
Length=11237
Score = 149 bits (164), Expect = 1e-30
Identities = 204/280 (73%), Gaps = 5/280 (2%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGA 7498
||||||||||||||| |||| || ||||| |||| |||| || ||||||| |
Sbjct 6352 AACGTTATATTTAATGTTTGCACTATTCTCTGG-ATTAGTAGGAACAGCATTTTCTGTTT 6410
Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558
| ||||| |||||| || ||| ||||||| |||| ||| || | ||| ||| | |
Sbjct 6411 TAATAAGATTAGAACTATCTGGTCCGGGTATTCAA-TATATAGCAG--ATAATCAATTAT 6467
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
||||| |||||| || || || || | || ||||| || ||| | || ||||| | |
Sbjct 6468 ACAACAGTATTATAACAGCACACGCAATAGTAATGATATTTTTTATGGTAATGCCAGCAA 6527
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
||||||| || ||||| |||| || | || ||||| | || | ||||||||||| |
Sbjct 6528 TGATAGGAGGCTTCGGTAATTTCTTATTACCCTTAATAGTAGGAGGACCTGATATGGCAT 6587
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718
|||| || | || ||||||||||||||||| |||| ||
Sbjct 6588 TTCCCAGATTAAATAATATAAGTTTTTGATTGTTACCTCC 6627
Score = 104 bits (114), Expect = 6e-17
Identities = 92/115 (80%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| ||||||||||||||||| ||||||||||| || | |||||||| || || || |
Sbjct 7033 TTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAATATAGGATCACCACCACCAGC 6974
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTTGGTTTATCA 370786
| |||||||| |||||||||||||||||| |||||||| ||| | || ||
Sbjct 6973 TACTTCAAAAAACGAAGTATTAAAATTTCTATCTGTTAAAACCATTGTTATAGCA 6919
>seq2947
Length=2254
Score = 131 bits (144), Expect = 4e-25
Identities = 194/273 (71%), Gaps = 3/273 (1%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| |||||| | ||||| | | |||||||| || | ||||| ||||||| | ||
Sbjct 1487 ACATTATATCTTATATTCGCTTTATTTTCTGGACTTGTGGGTACAGCATTTTCTGTACTT 1428
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560
||| | ||||||||| ||| || ||| |||| ||| || | | | ||| | |||
Sbjct 1427 ATACGTTTAGAATTATCTGGACCAGGTGTTCAA-TATATAGCAG--ACAATCAATTATAC 1371
Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620
|| ||| || || || || || | || ||||| || ||| | || ||||| | ||||
Sbjct 1370 AATAGTATAATAACAGCACACGCGATAGTAATGATATTTTTTATGGTAATGCCAGCTATG 1311
Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680
||||| |||||||| || | || | || ||| | | || | |||||||||||| ||
Sbjct 1310 ATAGGTGGTTTCGGTAACTTTTTATTACCATTATTAGTAGGAGGTCCTGATATGGCATTC 1251
Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713
|| || || || |||||||||||||||||| ||
Sbjct 1250 CCTAGACTAAATAATATAAGTTTTTGATTATTA 1218
>seq3243
Length=22439
Score = 113 bits (124), Expect = 1e-19
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606
||| |||| | || ||| || ||||| || || || | ||||||||||| ||| | |
Sbjct 4305 ATAACCAATTATATAACACAATAATTACAGCTCACGCTATAGTTATGATTTTTTTTATGG 4364
Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666
||||||| | ||||||||| ||||| ||||||| || | || || | | |||| ||
Sbjct 4365 TTATGCCAGCTATGATAGGTGGTTTTGGAAATTTTTTATTACCACTACTAGTGGGTGGTC 4424
Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713
| |||||||| ||||| || | || ||||||||||| |||||| ||
Sbjct 4425 CCGATATGGCATTTCCTAGATTAAATAATATAAGTTTCTGATTATTA 4471
>seq2683
Length=599
Score = 109 bits (120), Expect = 1e-18
Identities = 189/274 (69%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499
||| || |||||||| |||| | ||||| ||| | ||||| ||||| || |
Sbjct 15 AACATTGTATTTAATGTTTGCAGTATTTTCAGGTTTAGCTGGTACAGCTTTTTCAGTGTT 74
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559
|| || ||||||||| | | || ||| ||| | | | ||| ||| | ||
Sbjct 75 AATTAGATTAGAATTATCAGGACCAGGTGTACAATTTATAGCAGACAAT---CAATTATA 131
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| ||| || || || ||||| | || |||||||| || | || ||||| | | |
Sbjct 132 TAATAGTATAATCACAGCTCATGCTATAGTGATGATTTTTTTCATGGTAATGCCAGCTTT 191
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
||||| || || || |||| || | ||||||||||| |||| ||| |||||||| ||
Sbjct 192 AATAGGAGGCTTTGGTAATTTCTTATTACCTTTAATGATAGGTGGTCCAGATATGGCATT 251
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713
|| || | ||||||||||||||||||||| ||
Sbjct 252 CCCTAGATTAAACAATATAAGTTTTTGATTATTA 285
>seq1490
Length=1918
Score = 107 bits (118), Expect = 5e-18
Identities = 193/280 (69%), Gaps = 3/280 (1%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499
||| ||||||||||| |||| | ||||| || | || || ||| || ||| | |
Sbjct 178 AACATTATATTTAATGTTTGCTTTATTTTCAGGATTAATCGGAACTGCTTTCTCTGTTTT 237
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559
|| | |||||||| ||| || ||| || || || | | || ||| | ||
Sbjct 238 AATCCGTCTAGAATTATCTGGACCAGGTGTACAG-TACATAGCAG--ACAGTCAATTATA 294
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
||| ||| ||||| || || || | || ||||| || ||| | |||||||| | ||
Sbjct 295 CAATAGTATAATTACAGCCCACGCAATAGTAATGATATTTTTTATGGTTATGCCTGCAAT 354
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|||||| || || || |||| || | |||||| | | || | ||| |||||||| ||
Sbjct 355 GATAGGAGGATTTGGTAATTTTTTATTACCTTTATTAGTAGGAGGTCCAGATATGGCATT 414
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
||||| | || |||||||||||||||||| || ||||
Sbjct 415 CCCAAGATTAAATAATATAAGTTTTTGATTATTAGTGCCT 454
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732
|| |||||||| || || ||||| | ||||||||| | |||||||| || || || | |
Sbjct 858 TCGGGATGACCGAAGAACCAGAAAAGATGTTGATATAAAATAGGATCACCACCTCCAGCT 799
Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
|||||||| ||||||||||||||||| ||||||||
Sbjct 798 AATTCAAAAAATGATGTATTAAAATTTCTATCTGTTAAAAC 758
>seq640
Length=121632
Score = 107 bits (118), Expect = 5e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | || | ||||| || | |||||| || ||||||||
Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||||| ||||| || || || ||||||||||| |||||||| ||| ||| |||
Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| | ||| || || | ||||| ||||| ||||||| ||| || | |||
Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589
>seq1435
Length=581194
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| ||||| || || |||| |||||| |||| | ||
Sbjct 375891 CGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTG 375950
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| || ||||| || |||||||| || || |||||||| || || || |||
Sbjct 375951 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCT 376010
Query 225613 TCCTTGTCT 225621
|||||||||
Sbjct 376011 TCCTTGTCT 376019
>seq98
Length=790089
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| || || ||||| |||||||| || ||||| || ||||||||||| || ||||||||
Sbjct 148445 GAAGATCTGGCCATCGGTAATAGAAATGACATTGGTTGGGATATAAGCGGACACATCACC 148504
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
| || || |||| || ||||| ||||| || || ||||| ||
Sbjct 148505 MCCCTGGGTCTCGATAATAGGTAGCGCTGTAAGAGAACCACCGCC 148549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192471748220354
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |