Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3645 150 4e-31 seq1941 149 1e-30 seq2947 131 4e-25 seq3243 113 1e-19 seq2683 109 1e-18 seq1490 107 5e-18 seq640 107 5e-18 seq1435 98.7 2e-15 seq98 86.0 1e-11 >seq3645 Length=87304 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||||||||| ||||||| ||||| |||| | ||| | |||||| Sbjct 25573 AGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCC 25514 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| |||||||| | || || || || || ||||| || || ||||| Sbjct 25513 TCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCC 25454 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || || | |||||| || || ||||| ||| Sbjct 25453 TGGATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTC 25394 Query 225682 TTGCCCGT 225689 || || || Sbjct 25393 TTCCCAGT 25386 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||||||||| || || ||||| || | ||||| |||| | || Sbjct 25811 ACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAAAGTGT 25752 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| || || ||||| || |||||||| || || |||||||| || || ||||| Sbjct 25751 CCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGGATACC 25692 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || ||||| ||| ||| || || |||||||| | ||| || || | Sbjct 25691 TTCCTTATCCTGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGACCTCGAG 25632 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | |||||| Sbjct 25631 TGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || || || || ||||| || ||| ||||| |||| |||||||| | |||||| Sbjct 26267 ACGGAGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGT 26208 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| | || || ||||| || |||||||| Sbjct 26207 CCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACC 26148 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || || ||||| ||| || || || ||||| ||| | || || || || Sbjct 26147 CTCTTTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAA 26088 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||| || || | ||| || Sbjct 26087 GGTGATCGTCTTTCCAGTAAGAGTCTT 26061 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | |||||||||||| || || |||| || || || | | || Sbjct 25300 CGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTC 25241 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| ||||| || || || ||||| | || || || || || ||||| ||| Sbjct 25240 CGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCT 25181 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| |||||||||||||| | ||||| || | Sbjct 25180 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGG 25121 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 25120 GTGATGGTCTTGCCAGT 25104 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | ||| || ||||| | |||||||| || || | || || Sbjct 26029 AGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCC 25970 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| | || || ||||| || || ||||| ||||||||| Sbjct 25969 TCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 25910 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || || || |||||||| | ||| || || | ||| |||||| Sbjct 25909 TGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTC 25850 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | || |||| ||| | ||||||| Sbjct 25849 TTTCCCGTAAGGGTCTTTACGAAGATTTGCATT 25817 >seq1941 Length=11237 Score = 149 bits (164), Expect = 1e-30 Identities = 204/280 (73%), Gaps = 5/280 (2%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGA 7498 ||||||||||||||| |||| || ||||| |||| |||| || ||||||| | Sbjct 6352 AACGTTATATTTAATGTTTGCACTATTCTCTGG-ATTAGTAGGAACAGCATTTTCTGTTT 6410 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 | ||||| |||||| || ||| ||||||| |||| ||| || | ||| ||| | | Sbjct 6411 TAATAAGATTAGAACTATCTGGTCCGGGTATTCAA-TATATAGCAG--ATAATCAATTAT 6467 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 ||||| |||||| || || || || | || ||||| || ||| | || ||||| | | Sbjct 6468 ACAACAGTATTATAACAGCACACGCAATAGTAATGATATTTTTTATGGTAATGCCAGCAA 6527 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 ||||||| || ||||| |||| || | || ||||| | || | ||||||||||| | Sbjct 6528 TGATAGGAGGCTTCGGTAATTTCTTATTACCCTTAATAGTAGGAGGACCTGATATGGCAT 6587 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 |||| || | || ||||||||||||||||| |||| || Sbjct 6588 TTCCCAGATTAAATAATATAAGTTTTTGATTGTTACCTCC 6627 Score = 104 bits (114), Expect = 6e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||| || | |||||||| || || || | Sbjct 7033 TTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAATATAGGATCACCACCACCAGC 6974 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTTGGTTTATCA 370786 | |||||||| |||||||||||||||||| |||||||| ||| | || || Sbjct 6973 TACTTCAAAAAACGAAGTATTAAAATTTCTATCTGTTAAAACCATTGTTATAGCA 6919 >seq2947 Length=2254 Score = 131 bits (144), Expect = 4e-25 Identities = 194/273 (71%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || |||||| | ||||| | | |||||||| || | ||||| ||||||| | || Sbjct 1487 ACATTATATCTTATATTCGCTTTATTTTCTGGACTTGTGGGTACAGCATTTTCTGTACTT 1428 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 ||| | ||||||||| ||| || ||| |||| ||| || | | | ||| | ||| Sbjct 1427 ATACGTTTAGAATTATCTGGACCAGGTGTTCAA-TATATAGCAG--ACAATCAATTATAC 1371 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || || || || || | || ||||| || ||| | || ||||| | |||| Sbjct 1370 AATAGTATAATAACAGCACACGCGATAGTAATGATATTTTTTATGGTAATGCCAGCTATG 1311 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 ||||| |||||||| || | || | || ||| | | || | |||||||||||| || Sbjct 1310 ATAGGTGGTTTCGGTAACTTTTTATTACCATTATTAGTAGGAGGTCCTGATATGGCATTC 1251 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 || || || || |||||||||||||||||| || Sbjct 1250 CCTAGACTAAATAATATAAGTTTTTGATTATTA 1218 >seq3243 Length=22439 Score = 113 bits (124), Expect = 1e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606 ||| |||| | || ||| || ||||| || || || | ||||||||||| ||| | | Sbjct 4305 ATAACCAATTATATAACACAATAATTACAGCTCACGCTATAGTTATGATTTTTTTTATGG 4364 Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666 ||||||| | ||||||||| ||||| ||||||| || | || || | | |||| || Sbjct 4365 TTATGCCAGCTATGATAGGTGGTTTTGGAAATTTTTTATTACCACTACTAGTGGGTGGTC 4424 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 | |||||||| ||||| || | || ||||||||||| |||||| || Sbjct 4425 CCGATATGGCATTTCCTAGATTAAATAATATAAGTTTCTGATTATTA 4471 >seq2683 Length=599 Score = 109 bits (120), Expect = 1e-18 Identities = 189/274 (69%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| || |||||||| |||| | ||||| ||| | ||||| ||||| || | Sbjct 15 AACATTGTATTTAATGTTTGCAGTATTTTCAGGTTTAGCTGGTACAGCTTTTTCAGTGTT 74 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || ||||||||| | | || ||| ||| | | | ||| ||| | || Sbjct 75 AATTAGATTAGAATTATCAGGACCAGGTGTACAATTTATAGCAGACAAT---CAATTATA 131 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || || || ||||| | || |||||||| || | || ||||| | | | Sbjct 132 TAATAGTATAATCACAGCTCATGCTATAGTGATGATTTTTTTCATGGTAATGCCAGCTTT 191 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||||| || || || |||| || | ||||||||||| |||| ||| |||||||| || Sbjct 192 AATAGGAGGCTTTGGTAATTTCTTATTACCTTTAATGATAGGTGGTCCAGATATGGCATT 251 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 || || | ||||||||||||||||||||| || Sbjct 252 CCCTAGATTAAACAATATAAGTTTTTGATTATTA 285 >seq1490 Length=1918 Score = 107 bits (118), Expect = 5e-18 Identities = 193/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| |||| | ||||| || | || || ||| || ||| | | Sbjct 178 AACATTATATTTAATGTTTGCTTTATTTTCAGGATTAATCGGAACTGCTTTCTCTGTTTT 237 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | |||||||| ||| || ||| || || || | | || ||| | || Sbjct 238 AATCCGTCTAGAATTATCTGGACCAGGTGTACAG-TACATAGCAG--ACAGTCAATTATA 294 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| ||| ||||| || || || | || ||||| || ||| | |||||||| | || Sbjct 295 CAATAGTATAATTACAGCCCACGCAATAGTAATGATATTTTTTATGGTTATGCCTGCAAT 354 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 |||||| || || || |||| || | |||||| | | || | ||| |||||||| || Sbjct 355 GATAGGAGGATTTGGTAATTTTTTATTACCTTTATTAGTAGGAGGTCCAGATATGGCATT 414 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||| | || |||||||||||||||||| || |||| Sbjct 415 CCCAAGATTAAATAATATAAGTTTTTGATTATTAGTGCCT 454 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || |||||||| || || ||||| | ||||||||| | |||||||| || || || | | Sbjct 858 TCGGGATGACCGAAGAACCAGAAAAGATGTTGATATAAAATAGGATCACCACCTCCAGCT 799 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 |||||||| ||||||||||||||||| |||||||| Sbjct 798 AATTCAAAAAATGATGTATTAAAATTTCTATCTGTTAAAAC 758 >seq640 Length=121632 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || | |||||| || |||||||| Sbjct 86767 TTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGATC 86708 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||| ||||| || || || ||||||||||| |||||||| ||| ||| ||| Sbjct 86707 AACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 86648 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| | ||| || || | ||||| ||||| ||||||| ||| || | ||| Sbjct 86647 ATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAA 86589 >seq1435 Length=581194 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| |||||| |||| | || Sbjct 375891 CGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTG 375950 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| || |||||||| || || |||||||| || || || ||| Sbjct 375951 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATGCCT 376010 Query 225613 TCCTTGTCT 225621 ||||||||| Sbjct 376011 TCCTTGTCT 376019 >seq98 Length=790089 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||| |||||||| || ||||| || ||||||||||| || |||||||| Sbjct 148445 GAAGATCTGGCCATCGGTAATAGAAATGACATTGGTTGGGATATAAGCGGACACATCACC 148504 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 | || || |||| || ||||| ||||| || || ||||| || Sbjct 148505 MCCCTGGGTCTCGATAATAGGTAGCGCTGTAAGAGAACCACCGCC 148549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192471748220354