Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 113 4e-20
>seq1688
Length=109735
Score = 113 bits (124), Expect = 4e-20
Identities = 196/283 (69%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872
||||| |||||||||| || || ||| || | || || || || || || || |
Sbjct 95076 CTTGA-TATAAGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGA 95018
Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932
||||||| ||||| ||||||| || || | || ||||||||| || || | || |
Sbjct 95017 TCTGAAAACCGTAGAAGCATCGTGCCTCAGGTATCTGAACTTCGCCACTGAAGCGCTCAA 94958
Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992
| | ||| ||||| || ||||| || || ||||| || || | ||||| || || |
Sbjct 94957 CGAGGTTCTCGTTGACGATACCATCTGATGCAGCAAAGAAGGCAAGGACATGGGAGATGA 94898
Query 4993 AGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049
| || |||| ||| || ||| || ||||| | | || ||||||| | | ||||
Sbjct 94897 AATAGCGTTCATCATCGTTGAGTCGGTTGTTCCAATCGTGCCAATCTTTCGAGAGGTCAA 94838
Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092
||||| | ||||| || |||||||| || || ||||||||
Sbjct 94837 TCTCTTCCGCGGTCCAGAATGACGCTTCGGCCTTCTTGTACAT 94795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427029348640703
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |