Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1688 113 4e-20 >seq1688 Length=109735 Score = 113 bits (124), Expect = 4e-20 Identities = 196/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 ||||| |||||||||| || || ||| || | || || || || || || || | Sbjct 95076 CTTGA-TATAAGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGA 95018 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 ||||||| ||||| ||||||| || || | || ||||||||| || || | || | Sbjct 95017 TCTGAAAACCGTAGAAGCATCGTGCCTCAGGTATCTGAACTTCGCCACTGAAGCGCTCAA 94958 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 | | ||| ||||| || ||||| || || ||||| || || | ||||| || || | Sbjct 94957 CGAGGTTCTCGTTGACGATACCATCTGATGCAGCAAAGAAGGCAAGGACATGGGAGATGA 94898 Query 4993 AGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || |||| ||| || ||| || ||||| | | || ||||||| | | |||| Sbjct 94897 AATAGCGTTCATCATCGTTGAGTCGGTTGTTCCAATCGTGCCAATCTTTCGAGAGGTCAA 94838 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||||| | ||||| || |||||||| || || |||||||| Sbjct 94837 TCTCTTCCGCGGTCCAGAATGACGCTTCGGCCTTCTTGTACAT 94795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427029348640703