Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3658 84.2 2e-11 seq98 84.2 2e-11 >seq3658 Length=116049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 ||||||| |||||| || | || ||| | || |||| || ||||| || ||||| | Sbjct 9856 TCGTCAAAGTGAGGATGCGAACGACCAAGATTCCTCAGATCGGCGACAAATTCGCGTCGC 9915 Query 48568 TTCACGGCGCAAAAGGGGAC-ATGTGGAGC-CGTCCTGACCCAGGAGGACATGCCCTTCG 48625 |||||| || || || || || ||| | | | | || || || |||||||||||| Sbjct 9916 GGCACGGC-CAGAAAGGTACTATTGGGATCACTTACCGATCC--GAAGACATGCCCTTCA 9972 Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685 || || || |||||||| || ||||||||||| || |||||| |||| || | |||| Sbjct 9973 CCAGCGAAGGTGTGGTGCCAGATCTCATCATCAATCCGCACGCCATTCCGTCTCGCATGA 10032 Query 48686 C 48686 | Sbjct 10033 C 10033 >seq98 Length=790089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 |||||| || || || || || || || ||||||| |||| |||||||| || Sbjct 520346 GGAAAGTTCCTAGGTTCTCTTTCCAGTTGCACTTTCAGCGCATCCAGATGATCCAGATAC 520287 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 || ||||||||||||| || |||| || |||||| || | || ||||| Sbjct 520286 ACATGAGCGTCTCCCATCGTTTGGATGAAAGTTCCCGGCGTAAGATCACATACATGAGCG 520227 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | ||||| ||||||| || |||| ||| ||||| ||||| || ||||| ||||| || Sbjct 520226 AGCATGTGTGTGAGGATAGCGTAGGAGGCAATGTTGAAGGGCACGCCGAGGCCCATATC 520168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369489677391221