Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3190 156 6e-33 >seq3190 Length=146739 Score = 156 bits (172), Expect = 6e-33 Identities = 581/903 (64%), Gaps = 16/903 (2%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| ||||| | |||||| ||| || || ||| || || || | | || Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || | | || || || |||||||| ||||| || |||| ||||| | || Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 |||||| || | | ||| || || || |||||| | || | |||||| | Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 | ||| | ||||| || || || || || || | | || || || || ||||| || Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 || || | |||||| |||||||| || | || | | ||| || | ||| ||||| || Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 | || ||||| || | ||| || || | || || ||| | |||| | ||| Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 || ||||| ||| |||| || || |||||||| ||||| || ||||||||||| || Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || ||||| || |||||| || || || || | || || | || ||| || Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 || || || | || || || || || || || |||||| ||| | ||||| || || Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668 Query 78464 TTCAATAGCTGATTCTATGTC----CCATTGATGAATTCCTACCGCTACACGCATCAACA 78519 |||| | || | ||| || |||| || || || |||||||| | || Sbjct 23669 CTCAAGGACCTTCTCGACGTCATCTCCCCAGATG----CCAACAGCGACACGCATTATCA 23724 Query 78520 TATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 78579 | || ||||| || ||| | ||| | | | || || || || | || Sbjct 23725 TGTGTTGAGGCCTCTCAGCGACCTTGCCGTCGAGACGAAGCAGATAAGACCGCTCGAGAG 23784 Query 78580 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 | || ||||| || || | ||| ||||| |||| || || | || ||||||| | Sbjct 23785 TCTTGAAACCGAAGTATTGGTAGTTGAAA--TCTCGATCATAGACGATGGCAGAATTGAA 23842 Query 78638 TTTATCTTTGTATTTGGTAACAATATC-CATGACAGTAGTTGAAATAATAGGAGATCGTA 78696 | ||| || | | | ||| | || || | | || || ||||| | || Sbjct 23843 CTCTTCTGCGTGTCTCATTACAGTCTCGTGTGTTTGCTG-CGATATCATAGGTG-CCGGC 23900 Query 78697 CAC-CATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttt 78755 | | ||||| ||||| || |||| |||| |||| | ||| | ||| |||| Sbjct 23901 CTCTTGTTTTTGGGATTGACGTAGTGGAATAGATCTGAGACTACTGCCGAAAACTGTTTC 23960 Query 78756 tttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGA 78815 || |||| || |||||||| ||||||||||| | || || ||||| |||||||| || Sbjct 23961 TTCGTTTGTTTATGTAGATTTGATACAGCTATACGAGCCGCGAGAATGGCATAATCGGGG 24020 Query 78816 TGT 78818 ||| Sbjct 24021 TGT 24023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694635013046240