Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 156 6e-33
>seq3190
Length=146739
Score = 156 bits (172), Expect = 6e-33
Identities = 581/903 (64%), Gaps = 16/903 (2%)
Strand=Plus/Plus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
||||||||| ||||| | |||||| ||| || || ||| || || || | | ||
Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||| || || | | || || || |||||||| ||||| || |||| ||||| | ||
Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
|||||| || | | ||| || || || |||||| | || | |||||| |
Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308
Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163
| ||| | ||||| || || || || || || | | || || || || ||||| ||
Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368
Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223
|| || | |||||| |||||||| || | || | | ||| || | ||| ||||| ||
Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428
Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283
| || ||||| || | ||| || || | || || ||| | |||| | |||
Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488
Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343
|| ||||| ||| |||| || || |||||||| ||||| || ||||||||||| ||
Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548
Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403
|| ||||| || |||||| || || || || | || || | || ||| ||
Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608
Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463
|| || || | || || || || || || || |||||| ||| | ||||| || ||
Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668
Query 78464 TTCAATAGCTGATTCTATGTC----CCATTGATGAATTCCTACCGCTACACGCATCAACA 78519
|||| | || | ||| || |||| || || || |||||||| | ||
Sbjct 23669 CTCAAGGACCTTCTCGACGTCATCTCCCCAGATG----CCAACAGCGACACGCATTATCA 23724
Query 78520 TATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 78579
| || ||||| || ||| | ||| | | | || || || || | ||
Sbjct 23725 TGTGTTGAGGCCTCTCAGCGACCTTGCCGTCGAGACGAAGCAGATAAGACCGCTCGAGAG 23784
Query 78580 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637
| || ||||| || || | ||| ||||| |||| || || | || ||||||| |
Sbjct 23785 TCTTGAAACCGAAGTATTGGTAGTTGAAA--TCTCGATCATAGACGATGGCAGAATTGAA 23842
Query 78638 TTTATCTTTGTATTTGGTAACAATATC-CATGACAGTAGTTGAAATAATAGGAGATCGTA 78696
| ||| || | | | ||| | || || | | || || ||||| | ||
Sbjct 23843 CTCTTCTGCGTGTCTCATTACAGTCTCGTGTGTTTGCTG-CGATATCATAGGTG-CCGGC 23900
Query 78697 CAC-CATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttt 78755
| | ||||| ||||| || |||| |||| |||| | ||| | ||| ||||
Sbjct 23901 CTCTTGTTTTTGGGATTGACGTAGTGGAATAGATCTGAGACTACTGCCGAAAACTGTTTC 23960
Query 78756 tttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGA 78815
|| |||| || |||||||| ||||||||||| | || || ||||| |||||||| ||
Sbjct 23961 TTCGTTTGTTTATGTAGATTTGATACAGCTATACGAGCCGCGAGAATGGCATAATCGGGG 24020
Query 78816 TGT 78818
|||
Sbjct 24021 TGT 24023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694635013046240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |