Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3190 158 2e-33 seq1688 91.5 2e-13 >seq3190 Length=146739 Score = 158 bits (174), Expect = 2e-33 Identities = 402/608 (66%), Gaps = 4/608 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| ||||| | |||||| ||| ||| ||| ||| || ||||| | | || Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || || | | || || || |||||||| ||||| || |||| ||||| | || Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 |||||| || | | ||| || || || |||||| | || | ||||| | Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | ||||| || || || || || || | |||| || || || ||||| || Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 || || | |||||| || ||||| || | || | | ||| || | ||| ||||| || Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 | || ||||| || | ||| || || || || ||| | ||| || || Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 || ||||| ||| | || ||||| ||||| ||| ||||| ||||| ||||| || || Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || || || || |||||| || || || || | || || | || ||| || Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 || || || | || || || || || ||||| |||||| ||| | ||||| || || Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668 Query 77059 TTCAATAACTGCTTCTATATCCCAT-TGATGA-ATTCCTACAGCGACACGCATCAACATA 77116 |||| || ||||| | ||| | | || || |||||||||||||| | ||| Sbjct 23669 CTCAAGGAC--CTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCATG 23726 Query 77117 TGCTGAGG 77124 || ||||| Sbjct 23727 TGTTGAGG 23734 >seq1688 Length=109735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||| || || |||||||| ||||| || |||| ||| |||| ||| Sbjct 95042 TCGGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAGAAGCATCGTGCCTCAGGTATC 94983 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || || || || || ||| | ||||| || || || ||||| |||||| Sbjct 94982 TGAACTTCGCCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATACCATCTGATGCAGCA 94923 Query 47047 AAAAATGCCAATACATGTTTAATAAAATA---TTTTTCATCGGT-AGTCAGTTTATTCCA 47102 || || || | ||||| || ||||| || |||||| | |||| ||| ||||| Sbjct 94922 AAGAAGGCAAGGACATGGGAGATGAAATAGCGTTCATCATCGTTGAGTCGGTTG-TTCCA 94864 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || | |||||| || | || | ||||| || |||||||||||||| || || || Sbjct 94863 ATCGTGCCAATCTTTCGAGAGGTCAATCTCTTCCGCGGTCCAGAATGACGCTTCGGCCTT 94804 Query 47163 TTTATACATATTCCA 47177 || ||||| | ||| Sbjct 94803 CTTGTACATCTGCCA 94789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712899724653120