Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 158 2e-33
seq1688 91.5 2e-13
>seq3190
Length=146739
Score = 158 bits (174), Expect = 2e-33
Identities = 402/608 (66%), Gaps = 4/608 (1%)
Strand=Plus/Plus
Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578
||||||||| ||||| | |||||| ||| ||| ||| ||| || ||||| | | ||
Sbjct 23129 TTCAAATTCGTCTCCGTACACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGT 23188
Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638
||| || || | | || || || |||||||| ||||| || |||| ||||| | ||
Sbjct 23189 CCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAA 23248
Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698
|||||| || | | ||| || || || |||||| | || | ||||| |
Sbjct 23249 TAGATCGCGCGCGCGGACTTCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAA 23308
Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758
| ||| | ||||| || || || || || || | |||| || || || ||||| ||
Sbjct 23309 GACATCGGCGTGCCAAGGCTCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACC 23368
Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818
|| || | |||||| || ||||| || | || | | ||| || | ||| ||||| ||
Sbjct 23369 TTGGTCGACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGA 23428
Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878
| || ||||| || | ||| || || || || ||| | ||| || ||
Sbjct 23429 GGACCCGTTTGTGCCGGCAATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCC 23488
Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938
|| ||||| ||| | || ||||| ||||| ||| ||||| ||||| ||||| || ||
Sbjct 23489 AATGCCTCCCGCCGTCTTCGAGATCAGAGCGCAGGTCTTCAAGGTGTCGTAGATACCTTC 23548
Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998
|| || || || |||||| || || || || | || || | || ||| ||
Sbjct 23549 AATGCTGTCCTCTTTCATGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACC 23608
Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058
|| || || | || || || || || ||||| |||||| ||| | ||||| || ||
Sbjct 23609 AGCGTTGAAGAGAGTTGGGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGT 23668
Query 77059 TTCAATAACTGCTTCTATATCCCAT-TGATGA-ATTCCTACAGCGACACGCATCAACATA 77116
|||| || ||||| | ||| | | || || |||||||||||||| | |||
Sbjct 23669 CTCAAGGAC--CTTCTCGACGTCATCTCCCCAGATGCCAACAGCGACACGCATTATCATG 23726
Query 77117 TGCTGAGG 77124
|| |||||
Sbjct 23727 TGTTGAGG 23734
>seq1688
Length=109735
Score = 91.5 bits (100), Expect = 2e-13
Identities = 175/255 (69%), Gaps = 5/255 (2%)
Strand=Plus/Minus
Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986
|| || || ||||| || || |||||||| ||||| || |||| ||| |||| |||
Sbjct 95042 TCGGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAGAAGCATCGTGCCTCAGGTATC 94983
Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046
|| || || || || || ||| | ||||| || || || ||||| ||||||
Sbjct 94982 TGAACTTCGCCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATACCATCTGATGCAGCA 94923
Query 47047 AAAAATGCCAATACATGTTTAATAAAATA---TTTTTCATCGGT-AGTCAGTTTATTCCA 47102
|| || || | ||||| || ||||| || |||||| | |||| ||| |||||
Sbjct 94922 AAGAAGGCAAGGACATGGGAGATGAAATAGCGTTCATCATCGTTGAGTCGGTTG-TTCCA 94864
Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162
|| | |||||| || | || | ||||| || |||||||||||||| || || ||
Sbjct 94863 ATCGTGCCAATCTTTCGAGAGGTCAATCTCTTCCGCGGTCCAGAATGACGCTTCGGCCTT 94804
Query 47163 TTTATACATATTCCA 47177
|| ||||| | |||
Sbjct 94803 CTTGTACATCTGCCA 94789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712899724653120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |