Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq3645 156 3e-33
seq640 105 5e-18
>seq3645
Length=87304
Score = 156 bits (172), Expect = 3e-33
Identities = 162/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| | ||||||||||||||| ||||||||||| ||| || |||| |||
Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| || || |||||||| |||||||| |||| || | ||| ||||| ||
Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| || ||| | || ||||| | ||||| || |||| ||| ||||||||
Sbjct 25906 ATCTTTGACTT-AACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| |||||||| ||||||||||||||
Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818
Score = 145 bits (160), Expect = 5e-30
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| ||||||||||||||||| |||| ||| ||| | || ||
Sbjct 25571 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTC 25512
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||||||||| |||||||||||||||||||||| ||| | || || || |||
Sbjct 25511 AAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTG 25452
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | ||||| || | ||||||||||||| || || |||||
Sbjct 25451 GATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTT 25392
Query 44308 TCCCGTGAGGGTCTTCAC 44325
|| ||||||||||| ||
Sbjct 25391 CCCAGTGAGGGTCTTGAC 25374
Score = 127 bits (140), Expect = 1e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
|| || | ||||||||| || |||||||| || |||||||||||||| | | ||
Sbjct 26263 AGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGG 26204
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||||||||| || ||||||||||| |||||||| |||| || | ||| ||
Sbjct 26203 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCT 26144
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | | | || ||||||| | || || |||| ||
Sbjct 26143 TTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTG 26084
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| || || ||||| || ||||| |||||
Sbjct 26083 ATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046
Score = 123 bits (136), Expect = 2e-23
Identities = 170/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||||||||| | || | | || ||||| || || ||| || || ||||||||
Sbjct 25823 TTGCATTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTA 25764
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| ||| | | | || ||||| ||||| || || ||||| | |||||| || ||
Sbjct 25763 GTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTC 25704
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| || | ||||||||| ||| ||||||| ||| || ||| | || ||||| |
Sbjct 25703 CGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGT--CAATCGTGTCTGAC 25646
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| | || || ||||| || ||||| ||||| ||||||||||||||
Sbjct 25645 GATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590
Score = 105 bits (116), Expect = 5e-18
Identities = 138/189 (73%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || ||| |||||| |||||||| || || | || || |||| ||
Sbjct 25288 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCG 25229
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || |||||||||||||| ||||||||||| | ||| | |||||||| |||
Sbjct 25228 AGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 25169
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||| | || |||||||| | || || ||||
Sbjct 25168 ATCTTGGACTTGACATTGT--CGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCT 25111
Query 44307 TTCCCGTGA 44315
| || ||||
Sbjct 25110 TGCCAGTGA 25102
>seq640
Length=121632
Score = 105 bits (116), Expect = 5e-18
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| | || |||| |||||| || || ||||
Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| || ||||| || | || | |||||||| ||| ||||| ||| || |||
Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| ||||||||| ||||| ||||| | || || ||||| ||||| || ||||| ||
Sbjct 86649 --CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGAC 86592
Query 44326 GAAG 44329
||||
Sbjct 86591 GAAG 86588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359973328692747
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |