Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3645 156 3e-33 seq640 105 5e-18 >seq3645 Length=87304 Score = 156 bits (172), Expect = 3e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| | ||||||||||||||| ||||||||||| ||| || |||| ||| Sbjct 26026 ACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTCAGTGTCCGGCCGTCCTCC 25967 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || |||||||| |||||||| |||| || | ||| ||||| || Sbjct 25966 AACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 25907 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| || ||| | || ||||| | ||||| || |||| ||| |||||||| Sbjct 25906 ATCTTTGACTT-AACGTTGTCAATCGTGTCTGATGATTCGACTTCCAGCGTTATCGTCTT 25848 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| |||||||| |||||||||||||| Sbjct 25847 TCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 145 bits (160), Expect = 5e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| ||||||||||||||||| |||| ||| ||| | || || Sbjct 25571 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGCCCATCCTC 25512 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| |||||||||||||||||||||| ||| | || || || ||| Sbjct 25511 AAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTG 25452 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | ||||| || | ||||||||||||| || || ||||| Sbjct 25451 GATCTTAGCCTTCACATTGTCGATGGTATCCGATGATTCCACCTCCAAGGTGATGGTCTT 25392 Query 44308 TCCCGTGAGGGTCTTCAC 44325 || ||||||||||| || Sbjct 25391 CCCAGTGAGGGTCTTGAC 25374 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || || | ||||||||| || |||||||| || |||||||||||||| | | || Sbjct 26263 AGCCTAAGCACCAGGTGCAGGGTGCTCTCTTTCTGGATGTTGTAATCCGACAAAGTCCGG 26204 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || ||||||||||| |||||||| |||| || | ||| || Sbjct 26203 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCT 26144 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | | | || ||||||| | || || |||| || Sbjct 26143 TTATCCTGAATCTTGCTCTTGACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAAGGTG 26084 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || || ||||| || ||||| ||||| Sbjct 26083 ATCGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 26046 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||||||||| | || | | || ||||| || || ||| || || |||||||| Sbjct 25823 TTGCATTCCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTA 25764 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| | | | || ||||| ||||| || || ||||| | |||||| || || Sbjct 25763 GTCGGAAAGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTC 25704 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | || | ||||||||| ||| ||||||| ||| || ||| | || ||||| | Sbjct 25703 CGGTGGGATACCTTCCTTATCCTGTATCTTCGACTTGACATTGT--CAATCGTGTCTGAC 25646 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || ||||| || ||||| ||||| |||||||||||||| Sbjct 25645 GATTCGACCTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 Score = 105 bits (116), Expect = 5e-18 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| |||||||| || || | || || |||| || Sbjct 25288 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGATAGGGTCCGGCCGTCTTCG 25229 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || |||||||||||||| ||||||||||| | ||| | |||||||| ||| Sbjct 25228 AGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 25169 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || |||||||| | || || |||| Sbjct 25168 ATCTTGGACTTGACATTGT--CGATGGTGTCTGAAGACTCCACCTCAAGGGTGATGGTCT 25111 Query 44307 TTCCCGTGA 44315 | || |||| Sbjct 25110 TGCCAGTGA 25102 >seq640 Length=121632 Score = 105 bits (116), Expect = 5e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| | || |||| |||||| || || |||| Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| || ||||| || | || | |||||||| ||| ||||| ||| || ||| Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||||||| ||||| ||||| | || || ||||| ||||| || ||||| || Sbjct 86649 --CGATGGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGAC 86592 Query 44326 GAAG 44329 |||| Sbjct 86591 GAAG 86588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359973328692747