Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1435 129 5e-25 seq3645 120 3e-22 seq640 113 4e-20 >seq1435 Length=581194 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| || || ||| ||||||||| || || ||||||||| Sbjct 375885 CCACCGCGCAGCCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 375944 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||| |||||||||||||| || |||||||||||||||| || Sbjct 375945 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGG 376004 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 376005 ATGCCTTCCTTGTC 376018 >seq3645 Length=87304 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||| |||| |||||||||||| |||||||| || || Sbjct 26044 CCACCGCGCAGCCGAAGGACCAAGTGCAACGTGCTCTCCTTTTGAATGTTGTAATCACTC 25985 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | |||||| || ||||| |||| ||||| ||||| | || Sbjct 25984 AGTGTCCGGCCGTCCTCCAACTGCTTACCCGCGAAGATCAACCGCTGCTGGTCTGGTGGG 25925 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | |||| | |||| | | | ||||| || || || Sbjct 25924 ATACCCTCCTTGT-CTTGAATCTTTGACTTAACGTTGTCAATCGTGTCTGATGATTCGAC 25866 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 25865 TTCCAGCGTTATCGTCTTTCCCGTAAGGGTCTTTACGAAGATTTGCAT 25818 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||| |||| || || ||| ||||||||| ||||||||||| || Sbjct 25307 GCCTCCCCGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 25248 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| |||||||| |||||||| || |||| |||||| || |||| || Sbjct 25247 TAGGGTCCGGCCGTCTTCGAGCTGTTTGCCGGCAAAGATCAAGCGCTGCTGATCCGGAGG 25188 Query 41755 AACGCTCTCCTTGTCC 41770 || || ||||||||| Sbjct 25187 AATGCCTTCCTTGTCC 25172 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||| || || || ||| ||||| || ||||| ||||||||| Sbjct 25588 CCGCCACGGAGGCGGAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAG 25529 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || || |||||||| |||||||| |||| ||||| || || | ||| Sbjct 25528 AGAGTACGCCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 25469 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| ||| || |||| || | | | || || || ||||| Sbjct 25468 ATGCCCTCTTTGTCCTGGATCTTAGCCTTC-ACATTGTCGATGGTATCCGATGATTCCAC 25410 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||||| || || || || || || || ||||| || Sbjct 25409 CTCCAAGGTGATGGTCTTCCCAGTGAGGGTCTTGAC 25374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||| ||||||||||| |||||||| Sbjct 25816 CCCCCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAA 25757 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | | || || || |||||||| ||||| || || ||||||||||||| || Sbjct 25756 AGTGTCCTCCCATCCTCCAGTTGCTTGCCTGCGAAGATGAGACGCTGTTGGTCCGGTGGG 25697 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || | || | | || | | | ||||| ||| || || Sbjct 25696 ATACCTTCCTTATCC-TGTATCTTCGACTTGACATTGTCAATCGTGTCTGACGATTCGAC 25638 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || |||||||| ||||| || ||||| Sbjct 25637 CTCGAGTGTGATAGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 25590 >seq640 Length=121632 Score = 113 bits (124), Expect = 4e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| || ||||| | || || | ||||||||| ||||| | Sbjct 86769 CCTTCTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAGA 86710 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| || || ||||||| || | || ||||||||| ||| || ||| || | Sbjct 86709 TCAACCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 86650 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||| ||||||||||| || ||||| | || || || ||||||||||| ||||| || Sbjct 86649 CGATG--GTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGAC 86592 Query 41851 GAA 41853 ||| Sbjct 86591 GAA 86589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462281514689200