Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq23 223 4e-53 >seq23 Length=560556 Score = 223 bits (246), Expect = 4e-53 Identities = 296/405 (73%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 145866 CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 || |||||||||||| ||| | | |||||| |||||||| |||||| | |||||||| Sbjct 480186 CGACACGTAGAACTGCGCAAAC-ACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCC 480128 Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCC 145981 || |||||| ||| | | || || |||||| ||| || | |||||| || Sbjct 480127 GCGCGTTCCACGCGCTCATGATGA---TCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGT 480071 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGT 146041 | || | ||| ||||||||| || |||| ||| ||| || ||||||| |||||||| Sbjct 480070 CGATGACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGT 480011 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || | || || ||||||| ||||||||| ||||||||||| || ||||| || ||| | Sbjct 480010 ACTCTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGC 479951 Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161 |||| ||| || | | ||||||| || || ||||||||| ||||||| ||||||| Sbjct 479950 GGTGCGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGA 479891 Query 146162 CGCC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 |||| | |||| |||||| | |||||| ||| ||| ||||||||| |||||||| Sbjct 479890 CGCCGACGTCGCTGAGAGCCC--GGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTC 479833 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 ||| ||| | | | || |||| ||| ||||| || || || Sbjct 479832 GGCGACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 479788 Score = 118 bits (130), Expect = 1e-21 Identities = 217/312 (70%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||||| || | | ||| || | ||| |||| | | ||||||||||| || | Sbjct 480603 CATCTTCATGGCAATCGTCTTGTGCGGATCGTATCCCTTGACCACAAAGTCCTCCACCTT 480544 Query 145605 GAAGTCATCTATGTC-CTCCACCCGCCTCAGGA--TCCTGAGC-CTGGGAAAGGGCCGGG 145660 | | || ||| | | | || | | | || || |||| | ||||| || | Sbjct 480543 CCACCCGTCGATGCCGCATCCCCTGTCGCGCGAAATCTCGAGCTCGGGGAACTCGC--GA 480486 Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 |||||| | || | ||| | || |||| |||| | || | | ||||||||||||||| Sbjct 480485 GGCTCCCGCTCCACCTGCACGTTGAGGGCCTCCTCATGATCGGCGTAGACGTGCGCGTCG 480426 Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779 |||| ||||||| | | | ||||| ||| | | ||| || ||||||| || Sbjct 480425 CCCATGACGTGGGTCAGGCTGCCGGGTATCAGGTCGCACACGTGCGCCACCATGTGCGTG 480366 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 || || | ||||||||| |||||||| ||||| || || |||||||| | || |||||| Sbjct 480365 AGGAGCGCGTAGCTGGCAATGTTGAACGGCACGCCGAGACCCATGTCGCAGGACCGCTGG 480306 Query 145840 TACAGCTGGCAG 145851 |||||||||||| Sbjct 480305 TACAGCTGGCAG 480294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590073488193960