Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq23 223 4e-53
>seq23
Length=560556
Score = 223 bits (246), Expect = 4e-53
Identities = 296/405 (73%), Gaps = 12/405 (3%)
Strand=Plus/Minus
Query 145866 CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924
|| |||||||||||| ||| | | |||||| |||||||| |||||| | ||||||||
Sbjct 480186 CGACACGTAGAACTGCGCAAAC-ACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCC 480128
Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCC 145981
|| |||||| ||| | | || || |||||| ||| || | |||||| ||
Sbjct 480127 GCGCGTTCCACGCGCTCATGATGA---TCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGT 480071
Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGT 146041
| || | ||| ||||||||| || |||| ||| ||| || ||||||| ||||||||
Sbjct 480070 CGATGACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGT 480011
Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101
|| | || || ||||||| ||||||||| ||||||||||| || ||||| || ||| |
Sbjct 480010 ACTCTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGC 479951
Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161
|||| ||| || | | ||||||| || || ||||||||| ||||||| |||||||
Sbjct 479950 GGTGCGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGA 479891
Query 146162 CGCC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219
|||| | |||| |||||| | |||||| ||| ||| ||||||||| ||||||||
Sbjct 479890 CGCCGACGTCGCTGAGAGCCC--GGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTC 479833
Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264
||| ||| | | | || |||| ||| ||||| || || ||
Sbjct 479832 GGCGACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 479788
Score = 118 bits (130), Expect = 1e-21
Identities = 217/312 (70%), Gaps = 7/312 (2%)
Strand=Plus/Minus
Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604
||||| ||||| || | | ||| || | ||| |||| | | ||||||||||| || |
Sbjct 480603 CATCTTCATGGCAATCGTCTTGTGCGGATCGTATCCCTTGACCACAAAGTCCTCCACCTT 480544
Query 145605 GAAGTCATCTATGTC-CTCCACCCGCCTCAGGA--TCCTGAGC-CTGGGAAAGGGCCGGG 145660
| | || ||| | | | || | | | || || |||| | ||||| || |
Sbjct 480543 CCACCCGTCGATGCCGCATCCCCTGTCGCGCGAAATCTCGAGCTCGGGGAACTCGC--GA 480486
Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719
|||||| | || | ||| | || |||| |||| | || | | |||||||||||||||
Sbjct 480485 GGCTCCCGCTCCACCTGCACGTTGAGGGCCTCCTCATGATCGGCGTAGACGTGCGCGTCG 480426
Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779
|||| ||||||| | | | ||||| ||| | | ||| || ||||||| ||
Sbjct 480425 CCCATGACGTGGGTCAGGCTGCCGGGTATCAGGTCGCACACGTGCGCCACCATGTGCGTG 480366
Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839
|| || | ||||||||| |||||||| ||||| || || |||||||| | || ||||||
Sbjct 480365 AGGAGCGCGTAGCTGGCAATGTTGAACGGCACGCCGAGACCCATGTCGCAGGACCGCTGG 480306
Query 145840 TACAGCTGGCAG 145851
||||||||||||
Sbjct 480305 TACAGCTGGCAG 480294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590073488193960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |