Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 188 7e-43 seq67 165 8e-36 seq56 154 2e-32 seq13 105 7e-18 >seq1 Length=2302571 Score = 188 bits (208), Expect = 7e-43 Identities = 275/384 (72%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| | ||||||||| | || ||| | ||||| | | || || Sbjct 1624760 AAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGTCTAGCTTCGCCCAACGATTG 1624819 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT--TCGGGCAGTTTCGCCGCCATATTTT 117101 || |||||||| || ||||||||| ||||||| | | ||| ||||| |||| |||| Sbjct 1624820 GTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTCGCGTCCATCTTTT 1624877 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| ||||||||||||||||| || || ||| ||||| ||||| ||| | | Sbjct 1624878 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 1624937 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||| |||| ||||||||| || ||||| | ||| | ||| || | | Sbjct 1624938 ACGAGGGTTTGCACACCGACTTTGCATGCCTGCTGCACTCTCATCTCAAGCAAAGAGCAA 1624997 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | || || ||| ||||||| || ||| |||| ||||| ||||| | Sbjct 1624998 GCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAGATTTCCTGA 1625057 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || ||||| ||||| ||| || || | || | | | |||| |||||||||| Sbjct 1625058 CGGAGGCTCTGCC-GTGCGCTCTTCTCGGCATGAACTCCACACTGATGAAGCAATACATC 1625116 Query 117341 GAGTTCGTCGCCGACAGGCTGCTG 117364 || ||||| |||||| | ||| || Sbjct 1625117 GAATTCGTTGCCGACCGCCTGTTG 1625140 Score = 150 bits (166), Expect = 2e-31 Identities = 204/284 (72%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | ||| ||| | |||||| Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| |||||||| | || ||||||| Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 1624462 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || || || ||| || |||||||||||||| || ||||| ||||| Sbjct 1624463 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGG 1624522 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||||||||| | || || || || |||||||| || |||||| ||| Sbjct 1624523 TTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGATG 1624582 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||| | || || || | |||||| | ||||||||||| Sbjct 1624583 GAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTA 1624626 >seq67 Length=171618 Score = 165 bits (182), Expect = 8e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || ||||||||| |||| || || | Sbjct 155916 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 155857 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||||||| | ||| Sbjct 155856 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 155797 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||||||||| || ||||| ||||| || || | |||||||| ||||||| Sbjct 155796 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 155737 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| ||| ||||| | ||| ||||| || | || |||||| Sbjct 155736 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGCGGTGGCGGC 155683 >seq56 Length=194926 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || | || Sbjct 69398 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 69457 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| ||||||||||| | |||||| Sbjct 69458 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 69517 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || |||||||| || || |||| |||||||| |||||||||| Sbjct 69518 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 69577 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| || ||||| || | |||||| Sbjct 69578 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGGC 69625 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| || || ||||||||| |||| || || | | Sbjct 69170 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCT 69229 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| ||||||| ||||| ||||||||||| | |||||| Sbjct 69230 GACACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAG 69289 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || |||||||| || || | |||||||| |||||||||| Sbjct 69290 CAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAAC 69349 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| || | ||| || | ||||| Sbjct 69350 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGG 69396 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || ||||| ||||| ||||| | || || || | | Sbjct 69626 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 69685 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| || || || ||| | ||||| Sbjct 69686 GACACCATTGACAACG-TCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 69744 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || ||||| ||||| || |||| || || | ||||||||| Sbjct 69745 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 69804 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| |||| | | |||||| Sbjct 69805 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGGC 69853 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || |||||||| |||| || || | | Sbjct 69854 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 69913 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| ||||||| ||||| |||||||| || | || ||| Sbjct 69914 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 69973 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || || || ||||| || || | | | ||||| |||||||||| Sbjct 69974 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 70033 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || |||||| | ||| |||| || ||| | ||| || | || ||| Sbjct 70034 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGGC 70081 >seq13 Length=702126 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 || || || || || |||||||| |||||||| |||| ||||| || |||||| | Sbjct 289077 TTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGATC 289136 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||||||||| | |||||||| || | Sbjct 289137 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTTG 289196 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| |||||||| || | || ||||| |||||||||||| |||||| Sbjct 289197 ATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAAG 289256 Query 40879 G 40879 | Sbjct 289257 G 289257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216308332240