Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq56 138 1e-27 seq67 125 6e-24 seq13 109 5e-19 seq2 96.9 3e-15 >seq56 Length=194926 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| |||||||||||||| ||| | || | | |||||| Sbjct 70063 CACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTC 70004 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| ||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 70003 AAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTG 69944 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || | || | ||| || | ||| ||||||| || | || || Sbjct 69943 AATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTT 69884 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || |||||||||||| Sbjct 69883 CCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||| || ||||| ||| ||||||||||| ||| Sbjct 69366 GTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCGAGCTGTTTACCA 69307 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | |||||||| ||||| || ||||||||||||||| |||||| || Sbjct 69306 GCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGAATTTTCGACTTG 69247 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||| ||||||| ||| | || || ||||| || || Sbjct 69246 ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 69187 Query 118722 TTTACAAAAATCTGCATGG 118740 ||||| || || ||||||| Sbjct 69186 TTTACGAAGATTTGCATGG 69168 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| ||| | Sbjct 69852 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 69793 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||||||||| || || || |||| || |||||||| ||||| || Sbjct 69792 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 69733 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||||||| ||| || || || | || | |||||| | ||| || Sbjct 69732 ATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACT 69673 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || ||||| || || ||||| || |||||| Sbjct 69672 TCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 69625 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || || || |||||||| ||| || ||||| || ||||| ||| Sbjct 69600 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTGT 69541 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| | || ||||| ||||| || ||||||||||||||| ||||| Sbjct 69540 TTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTC 69481 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||| | ||| | || || || || Sbjct 69480 GCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGTG 69421 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 69420 AGGGTCTTGACGAAGATCTGCAT 69398 >seq67 Length=171618 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||||||| | || ||| || || |||||||| ||| | Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||||||||| || ||||| ||||||| |||||||| ||||| || Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| |||||| | ||| ||| Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | || || || || || || || || ||||||||||| Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq13 Length=702126 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || |||||| ||||| || ||||| |||| Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||| |||||||| |||||||||||||| || || || || | ||| Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | | ||||||||||| || | || ||||| ||||| || || |||||| Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 289076 >seq2 Length=1075658 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||| || || ||||||| | || | || |||||| | | Sbjct 441091 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 441150 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| ||| | ||||||||||||| ||| | Sbjct 441151 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 441210 Query 133342 CCAACAAAGAGTT 133354 || || ||||| Sbjct 441211 GCAGCAGCGAGTT 441223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828025998708