Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq56 138 1e-27
seq67 125 6e-24
seq13 109 5e-19
seq2 96.9 3e-15
>seq56
Length=194926
Score = 138 bits (152), Expect = 1e-27
Identities = 157/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| |||||||||||||| ||| | || | | ||||||
Sbjct 70063 CACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTC 70004
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || ||||| ||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 70003 AAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTG 69944
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||||| || || | || | ||| || | ||| ||||||| || | || ||
Sbjct 69943 AATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTT 69884
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||||||| || || || ||||||||||||
Sbjct 69883 CCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853
Score = 125 bits (138), Expect = 6e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| ||| || ||||| ||| ||||||||||| |||
Sbjct 69366 GTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCGAGCTGTTTACCA 69307
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| | |||||||| ||||| || ||||||||||||||| |||||| ||
Sbjct 69306 GCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGAATTTTCGACTTG 69247
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||| | ||| ||||||| ||| | || || ||||| || ||
Sbjct 69246 ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 69187
Query 118722 TTTACAAAAATCTGCATGG 118740
||||| || || |||||||
Sbjct 69186 TTTACGAAGATTTGCATGG 69168
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| | | || ||||| ||| | || ||||| || || |||||||| ||| |
Sbjct 69852 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 69793
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || ||||||||||| || || || |||| || |||||||| ||||| ||
Sbjct 69792 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 69733
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| || ||||||||| ||| || || || | || | |||||| | ||| ||
Sbjct 69732 ATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACT 69673
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| | || | ||||| || ||||| || || ||||| || ||||||
Sbjct 69672 TCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 69625
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || || || || || |||||||| ||| || ||||| || ||||| |||
Sbjct 69600 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTGT 69541
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| ||||| |||| | || ||||| ||||| || ||||||||||||||| |||||
Sbjct 69540 TTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTC 69481
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | |||| |||||| | ||| ||||| | ||| | || || || ||
Sbjct 69480 GCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGTG 69421
Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||||||
Sbjct 69420 AGGGTCTTGACGAAGATCTGCAT 69398
>seq67
Length=171618
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| | | || ||||||||| | || ||| || || |||||||| ||| |
Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||||| |||||||||||| || ||||| ||||||| |||||||| ||||| ||
Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|||||||||||||| || || || || | |||| |||||| | ||| |||
Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| ||| | || || || || || || || || |||||||||||
Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913
>seq13
Length=702126
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| ||||||||||| ||| || || || |||||| ||||| || ||||| ||||
Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||| |||||||| |||||||||||||| || || || || | |||
Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||| | | ||||||||||| || | || ||||| ||||| || || ||||||
Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 289076
>seq2
Length=1075658
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281
||||||| || || |||||||| || || ||||||| | || | || |||||| | |
Sbjct 441091 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 441150
Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341
| ||||| | ||||||||||| || ||||||| ||| | ||||||||||||| ||| |
Sbjct 441151 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 441210
Query 133342 CCAACAAAGAGTT 133354
|| || |||||
Sbjct 441211 GCAGCAGCGAGTT 441223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433828025998708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |