Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq67 145 9e-30
seq56 123 3e-23
seq13 114 1e-20
>seq67
Length=171618
Score = 145 bits (160), Expect = 9e-30
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||||| |||| ||||||||||| || || ||||| || ||||| || || |
Sbjct 155699 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 155758
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| ||||| || ||||||||||||||||||| || | || |||||||
Sbjct 155759 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 155818
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| || ||||| |||| ||||||
Sbjct 155819 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 155878
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| || ||||| || ||||| || || || ||||| ||
Sbjct 155879 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916
>seq56
Length=194926
Score = 123 bits (136), Expect = 3e-23
Identities = 171/237 (72%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 42948 TCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 43007
|| ||||| || || | | || | ||||| ||||| || |||||||||||| |||
Sbjct 70089 TCTTATTGGCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTG 70030
Query 43008 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 43067
|| || || || || | | | || || |||||||||||||| || ||||||||||||||
Sbjct 70029 TAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGA 69970
Query 43068 TCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCT 43126
|| | || | || |||||||| | ||| |||| | || | | | | || ||
Sbjct 69969 TCAGGAGGAATGCCCTCCTTGT-CTTGAATTTTCGACTTCACATTATCAATGGTATCAGA 69911
Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| |||| ||||||||| || || || |||||||| || || || |||||
Sbjct 69910 CGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
Score = 122 bits (134), Expect = 1e-22
Identities = 161/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| |||| ||| |||||| || || ||||| || |||| || || |
Sbjct 69841 ACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCC 69782
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || || || || |||||||||||||||| || | | |||||
Sbjct 69781 GTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTT 69722
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|| | ||| | || | |||| ||| | | | ||||| ||| || || || | ||||
Sbjct 69721 GT-CTTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTG 69664
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| ||||| || ||||| ||||||||||||||
Sbjct 69663 ATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| ||| | ||| ||||| || || ||||| || ||||| || || | || ||
Sbjct 69378 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 69319
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
||||| |||||||| || || | ||||||||||||| ||| | || |||||||| | ||
Sbjct 69318 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT-CTTG 69260
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| |||| | |||| | | | ||||| || ||||| |||| |||||||| ||
Sbjct 69259 AATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 69200
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || |||||||| |||||||||||
Sbjct 69199 TCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
>seq13
Length=702126
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| ||||| ||||| || ||||| || || | || || |||||||| ||||| || |
Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | ||||||||||||| || | || |||||||||| ||| || |||| |
Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 289138
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||||| || || || |||| ||||||||| |||||||| || ||||| ||||
Sbjct 289137 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 289078
Query 43174 A 43174
|
Sbjct 289077 A 289077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814390673720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |