Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 2e-12
>seq1
Length=2302571
Score = 87.8 bits (96), Expect = 2e-12
Identities = 193/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564
||||| || || || | |||| |||| | || ||||| ||||||||||| |||||
Sbjct 1624629 ATATACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGG 1624570
Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624
|| || || || || | ||||| | | || || || | |||| || | | |
Sbjct 1624569 AACCCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGG 1624510
Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684
|||||||| || || ||||| || ||||| || || | ||||| ||| ||||
Sbjct 1624509 TTTTCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATAC 1624450
Query 16685 ttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741
||||| | || | | | || |||||| ||||| || || | || | ||||
Sbjct 1624449 TTTTCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCT 1624390
Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788
|| | ||||| |||||||| ||||||| || ||||||| ||||||
Sbjct 1624389 TCGGCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462509404151400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |