Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=2302571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| || || || | |||| |||| | || ||||| ||||||||||| ||||| Sbjct 1624629 ATATACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGG 1624570 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || || || || || | ||||| | | || || || | |||| || | | | Sbjct 1624569 AACCCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGG 1624510 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 |||||||| || || ||||| || ||||| || || | ||||| ||| |||| Sbjct 1624509 TTTTCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATAC 1624450 Query 16685 ttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 ||||| | || | | | || |||||| ||||| || || | || | |||| Sbjct 1624449 TTTTCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCT 1624390 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 || | ||||| |||||||| ||||||| || ||||||| |||||| Sbjct 1624389 TCGGCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509404151400