Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 197 3e-45 >seq2 Length=1075658 Score = 197 bits (218), Expect = 3e-45 Identities = 420/620 (68%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| ||||||||| |||||||||||| || | || |||||||| || || Sbjct 442574 CTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGA 442515 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 |||| |||||||||| | ||||| || |||||||| || || |||| ||| | Sbjct 442514 ACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCG 442455 Query 248946 CGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGAC 249002 ||| || || || |||| | ||| ||| || || | || || ||| |||| || Sbjct 442454 CGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCT---TCACCCACGCCTCACCTAC 442398 Query 249003 GCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 ||||||||||| || || | || | |||||| ||||||||| || | | |||| Sbjct 442397 CCTCTTCAACGCGGGCACGCCTC-AGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGA 442339 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120 | || ||| |||| ||||| || ||||| || || || | || | |||||||||| Sbjct 442338 AGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGC-GCCATGATTTCTAAA 442280 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 | || ||||| ||||| || |||| | ||| || || | || || ||||| Sbjct 442279 ATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCCTACATTGCC 442220 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240 || || || || | | || |||| ||| | || ||| ||| | ||| ||| Sbjct 442219 GGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCC 442160 Query 249241 AGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 || | | || |||| | ||| | ||| ||| | |||||||| || |||| Sbjct 442159 AGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCC 442100 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 |||||||||||| | || || ||||| || | | ||||||| ||||||| ||| | Sbjct 442099 TGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTC 442040 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | || || ||||||||| | |||||| || ||||| | |||||| || ||| || Sbjct 442039 CGCGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAG 441980 Query 249418 GCCGACGGCGATTGGACGCT 249437 | ||||| ||||| || Sbjct 441979 AAGAATGGCGACTGGACCCT 441960 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/256 (68%), Gaps = 18/256 (7%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| || |||| || ||||| || ||||||||||| || ||||| |||||||| | Sbjct 217127 TGCTGCTCTACGGCCCCCCCGGCACGGGCAAGACGTCCACGATCCTAGCGCTGGCGAGGC 217186 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 | | | || | |||||| | || ||||| ||||| ||||| || ||||| | Sbjct 217187 GCATCTACGGAACCGCAAACATGCGTCAGATGGTGCTGGAGCTCAACGCCTCGGACGACC 217246 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT------CTCCAAG---ATGT--- 254178 |||| | ||||| || ||||| |||||||||| || | ||||| || | Sbjct 217247 GCGGCATCGACGTGGTGCGCGAGCAGATCAAGACGTTTGCCAGCACCAAGCAAATCTTCG 217306 Query 254179 CGAT---TTCGTCGTTCCAACCCGGCT-GTCCGCC--TTTCAAGCTCGTGATCCTGGACG 254232 | || ||||| | | || ||| | ||| ||||||||| | |||||||||| Sbjct 217307 CCATGGGCGCGTCGGCCAAGGCCAGCTCGATGGCCGGGTTCAAGCTCATCATCCTGGACG 217366 Query 254233 AGGCGGACACCATGAC 254248 |||| ||| ||||||| Sbjct 217367 AGGCCGACGCCATGAC 217382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073760222823232