Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 524 7e-144 seq56 138 1e-27 seq67 96.9 3e-15 seq13 89.7 5e-13 >seq2 Length=1075658 Score = 524 bits (580), Expect = 7e-144 Identities = 1265/1890 (67%), Gaps = 42/1890 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| |||| | ||||| | || ||||| | || |||||||| Sbjct 440744 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCC 440803 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||||| ||||||| || ||| || |||||||| | || || | || Sbjct 440804 AGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTGG 440863 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||| |||||||| || || || |||||||| Sbjct 440864 GTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGC 440923 Query 22285 CATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | || ||| |||| ||| |||||||| || ||||||||||| | | | || Sbjct 440924 CATCTGCACCACATG-ACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCT 440982 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||||| || ||||| | | ||||| ||| || | Sbjct 440983 CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCA 441042 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACCAC 22461 | | || ||||| ||| ||| || | ||| |||| || ||| |||| || || Sbjct 441043 TGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG--GGTTGACGAC 441100 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || |||||||| | || |||||| || |||||||||||||| ||| | || ||||| | Sbjct 441101 CTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCA 441160 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| ||||| ||||| | || || || || ||||| ||||| | ||| ||||| Sbjct 441161 CTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGA 441220 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC--ATCGACCAGTCCCACAGA 22636 ||| | | ||||||| |||| | | ||| ||||| ||| ||| ||||||| Sbjct 441221 GTTGCGAATCCCGTGCTCCTTGA---TCTGCTCCTTGAGGGAATC--CCACTCCCACAAG 441275 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCT 22695 |||||||||||||| || |||||| || | |||| | ||| | ||||| | | Sbjct 441276 TCGGACGGCGTCACGTT---CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGAT 441332 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754 |||| | |||| ||| ||||| | | ||| || || || | |||| ||| | Sbjct 441333 CCCTT-GAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAGG 441390 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTT 22811 || ||| || || ||||| || || | |||||||| ||| || ||| || || Sbjct 441391 CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGG-GAGACT-- 441447 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | | ||||| || | | | ||| ||||| |||| || ||||| || | ||| || | Sbjct 441448 CAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGG 441507 Query 22872 GTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929 | || | || || | || ||| || | | || || || ||||| Sbjct 441508 GACGATGCCGCATGTTG--CTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGAT 441565 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | |||| | |||| | || | || | | |||||||| Sbjct 441566 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 441625 Query 22990 AACGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 ||| | | ||| | ||||| | | ||| | |||||||| ||||| ||||| Sbjct 441626 CTTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGC 441685 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||||| || || |||||| | ||| ||||| || || ||| | || || Sbjct 441686 AACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGT 441745 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || |||||||||| || | ||||| ||||||||| ||||| | || | Sbjct 441746 TCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTT 441805 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||| |||||| ||| | ||||| ||||| ||||| |||| ||| | | ||| Sbjct 441806 GCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATT-GTCT 441864 Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 || | | |||||| ||||||||||| ||||| || ||||| ||| | ||||| | Sbjct 441865 TGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 441924 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTC 23343 ||||||| || || || ||| | || |||||||| |||| | | | || || || Sbjct 441925 AGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG-TCGCCATTC-TTCTC 441982 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 || || |||| || || || || ||||| || || ||| || ||||| ||||| || Sbjct 441983 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 442042 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 ||||| |||||| ||||||| | | ||| | || || || || || || ||||| || Sbjct 442043 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 442102 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 ||| ||||| | ||| || |||||||||| ||| |||||||| || |||||||| | ||| Sbjct 442103 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 442162 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 ||||||||| | |||| ||||| || |||| ||||| || | |||| ||| || Sbjct 442163 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 442222 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | || || | || |||| | ||| |||| | || || || ||| || ||| Sbjct 442223 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 442282 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || ||||| ||||| || ||||||||||||||||||||||||||||| || || | Sbjct 442283 AGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCAT 442342 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 |||| | ||| ||||| || | || | ||||| | || ||| || || || Sbjct 442343 GTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGG 442402 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 |||||| || ||| || | | ||||| || ||||| || || | | || ||||| Sbjct 442403 TGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAAT 442462 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || ||||| || |||| || || ||||| ||||||| ||||||| ||||| | Sbjct 442463 GTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAAT 442522 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||||| | || | ||||| || || | || ||| || || ||||| || | ||| Sbjct 442523 CTTGCCGTCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATA 442582 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||| ||||| | |||| || ||||| || Sbjct 442583 GTTGAAGTCTCTCTCGTAAACAATGGCAGA 442612 >seq56 Length=194926 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||||||||| || || || || || |||||| |||| || || Sbjct 69165 CAACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGT 69224 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | ||||| || ||| |||||||| ||| | ||||||| Sbjct 69225 CTTCTGACACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCG 69284 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | || || ||||| |||||| | ||||| || || ||| | Sbjct 69285 ACCAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACT 69344 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || ||||| || ||||||||||| ||| | ||| | ||||||| Sbjct 69345 ACAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGTA 69398 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || || | ||| Sbjct 69398 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 69457 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || ||| |||||||| ||| | |||||||||||| Sbjct 69458 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 69517 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||||||||| | |||||| || || ||| || ||| Sbjct 69518 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 69577 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || || ||||| || || | ||| | ||||| Sbjct 69578 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGG 69624 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| ||||| || ||||| ||||| | || ||||| |||| Sbjct 69625 CATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTC 69684 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || ||||||||||| | || |||||||| Sbjct 69685 AGACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 69744 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| | || ||| || || ||| || || Sbjct 69745 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 69804 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 69805 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 69837 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||| || || || ||||| |||| || || |||| Sbjct 69853 CATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTC 69912 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| |||||||| ||| | || || || || Sbjct 69913 TGATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCA 69972 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || | || | ||| || || Sbjct 69973 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 70032 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || ||||| | || ||||| || Sbjct 70033 CATTCAAAAGGAGTCGACGTTGCACCTGGTGCT 70065 >seq67 Length=171618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || |||||| |||| || || | Sbjct 155916 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 155857 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 155856 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 155797 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| | || || Sbjct 155796 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 155759 >seq13 Length=702126 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || ||||| ||||| ||||| || ||||| |||| || || | ||||||| | Sbjct 289076 TTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGAT 289135 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | || ||||||||| ||| | || ||||||||||||||| | Sbjct 289136 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTT 289195 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || || |||||||| ||| |||| || Sbjct 289196 GATCTTTGCTGGCAAGCAGCTGGAGGA 289222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763898136080