Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 524 7e-144
seq56 138 1e-27
seq67 96.9 3e-15
seq13 89.7 5e-13
>seq2
Length=1075658
Score = 524 bits (580), Expect = 7e-144
Identities = 1265/1890 (67%), Gaps = 42/1890 (2%)
Strand=Plus/Plus
Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164
|| ||| || || ||||| |||| | ||||| | || ||||| | || ||||||||
Sbjct 440744 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCC 440803
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
||||| ||||||| ||||||| || ||| || |||||||| | || || | ||
Sbjct 440804 AGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTGG 440863
Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
| ||||| | |||| ||||| ||| |||||||| || || || ||||||||
Sbjct 440864 GTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGC 440923
Query 22285 CATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
||| | | || ||| |||| ||| |||||||| || ||||||||||| | | | ||
Sbjct 440924 CATCTGCACCACATG-ACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCT 440982
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| || || ||| |||||| || ||||| | | ||||| ||| || |
Sbjct 440983 CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCA 441042
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACCAC 22461
| | || ||||| ||| ||| || | ||| |||| || ||| |||| || ||
Sbjct 441043 TGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG--GGTTGACGAC 441100
Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521
|| |||||||| | || |||||| || |||||||||||||| ||| | || ||||| |
Sbjct 441101 CTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCA 441160
Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581
|| ||||| ||||| ||||| | || || || || ||||| ||||| | ||| |||||
Sbjct 441161 CTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGA 441220
Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC--ATCGACCAGTCCCACAGA 22636
||| | | ||||||| |||| | | ||| ||||| ||| ||| |||||||
Sbjct 441221 GTTGCGAATCCCGTGCTCCTTGA---TCTGCTCCTTGAGGGAATC--CCACTCCCACAAG 441275
Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCT 22695
|||||||||||||| || |||||| || | |||| | ||| | ||||| | |
Sbjct 441276 TCGGACGGCGTCACGTT---CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGAT 441332
Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754
|||| | |||| ||| ||||| | | ||| || || || | |||| ||| |
Sbjct 441333 CCCTT-GAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAGG 441390
Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTT 22811
|| ||| || || ||||| || || | |||||||| ||| || ||| || ||
Sbjct 441391 CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGG-GAGACT-- 441447
Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871
| | ||||| || | | | ||| ||||| |||| || ||||| || | ||| || |
Sbjct 441448 CAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGG 441507
Query 22872 GTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929
| || | || || | || ||| || | | || || || |||||
Sbjct 441508 GACGATGCCGCATGTTG--CTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGAT 441565
Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989
| |||| | |||| | || | || | | ||||||||
Sbjct 441566 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 441625
Query 22990 AACGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046
||| | | ||| | ||||| | | ||| | |||||||| ||||| |||||
Sbjct 441626 CTTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGC 441685
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||||| || || |||||| | ||| ||||| || || ||| | || ||
Sbjct 441686 AACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGT 441745
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| || |||||||||| || | ||||| ||||||||| ||||| | || |
Sbjct 441746 TCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTT 441805
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226
||| |||||| ||| | ||||| ||||| ||||| |||| ||| | | |||
Sbjct 441806 GCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATT-GTCT 441864
Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285
|| | | |||||| ||||||||||| ||||| || ||||| ||| | ||||| |
Sbjct 441865 TGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 441924
Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTC 23343
||||||| || || || ||| | || |||||||| |||| | | | || || ||
Sbjct 441925 AGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG-TCGCCATTC-TTCTC 441982
Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403
|| || |||| || || || || ||||| || || ||| || ||||| ||||| ||
Sbjct 441983 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 442042
Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463
||||| |||||| ||||||| | | ||| | || || || || || || ||||| ||
Sbjct 442043 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 442102
Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523
||| ||||| | ||| || |||||||||| ||| |||||||| || |||||||| | |||
Sbjct 442103 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 442162
Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583
||||||||| | |||| ||||| || |||| ||||| || | |||| ||| ||
Sbjct 442163 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 442222
Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643
| || || | || |||| | ||| |||| | || || || ||| || |||
Sbjct 442223 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 442282
Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703
|| ||||| ||||| || ||||||||||||||||||||||||||||| || || |
Sbjct 442283 AGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCAT 442342
Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763
|||| | ||| ||||| || | || | ||||| | || ||| || || ||
Sbjct 442343 GTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGG 442402
Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823
|||||| || ||| || | | ||||| || ||||| || || | | || |||||
Sbjct 442403 TGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAAT 442462
Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883
|| ||||| || |||| || || ||||| ||||||| ||||||| ||||| |
Sbjct 442463 GTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAAT 442522
Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943
||||| | || | ||||| || || | || ||| || || ||||| || | |||
Sbjct 442523 CTTGCCGTCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATA 442582
Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973
||| ||||| | |||| || ||||| ||
Sbjct 442583 GTTGAAGTCTCTCTCGTAAACAATGGCAGA 442612
>seq56
Length=194926
Score = 138 bits (152), Expect = 1e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| ||||||||| ||||||||||| || || || || || |||||| |||| || ||
Sbjct 69165 CAACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGT 69224
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| || |||| |||| | ||||| || ||| |||||||| ||| | |||||||
Sbjct 69225 CTTCTGACACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCG 69284
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| | || || ||||| |||||| | ||||| || || ||| |
Sbjct 69285 ACCAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACT 69344
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || ||||| || ||||||||||| ||| | ||| | |||||||
Sbjct 69345 ACAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGTA 69398
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || |||||| | || || || | |||
Sbjct 69398 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 69457
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || ||| |||||||| ||| | ||||||||||||
Sbjct 69458 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 69517
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| || | || || ||||||||||| | |||||| || || ||| || |||
Sbjct 69518 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 69577
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || ||||| || || ||||| || || | ||| | |||||
Sbjct 69578 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGG 69624
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| || || ||||| ||||| || ||||| ||||| | || ||||| ||||
Sbjct 69625 CATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTC 69684
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || || ||||||||||| | || ||||||||
Sbjct 69685 AGACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 69744
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || || ||||| ||| | || ||| || || ||| || ||
Sbjct 69745 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 69804
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || ||||| ||
Sbjct 69805 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 69837
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| ||||| ||||| || || || ||||| |||| || || ||||
Sbjct 69853 CATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTC 69912
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || | || || || ||| |||||||| ||| | || || || ||
Sbjct 69913 TGATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCA 69972
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || ||||| || ||| | || || | || | ||| || ||
Sbjct 69973 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 70032
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||||||| || ||||| | || ||||| ||
Sbjct 70033 CATTCAAAAGGAGTCGACGTTGCACCTGGTGCT 70065
>seq67
Length=171618
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || || |||||| |||| || || |
Sbjct 155916 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 155857
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || ||||||
Sbjct 155856 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 155797
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || || |||||||| ||| | || ||
Sbjct 155796 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 155759
>seq13
Length=702126
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260
||| || ||||| ||||| ||||| || ||||| |||| || || | ||||||| |
Sbjct 289076 TTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGAT 289135
Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320
||| | ||||| | || ||||||||| ||| | || ||||||||||||||| |
Sbjct 289136 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTT 289195
Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347
|| || |||||||| ||| |||| ||
Sbjct 289196 GATCTTTGCTGGCAAGCAGCTGGAGGA 289222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763898136080
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