Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 116 7e-21 >seq1 Length=2302571 Score = 116 bits (128), Expect = 7e-21 Identities = 293/438 (67%), Gaps = 13/438 (3%) Strand=Plus/Plus Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969 ||| | | |||||||| || || || || || |||||||| |||||||||||||| |||| Sbjct 1624812 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCA 1624871 Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029 | || ||| ||||||| | || | |||| || || |||| ||| || || |||| | Sbjct 1624872 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATAT 1624931 Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG 102089 | | ||||| ||| | || ||||||||||||| ||||| | | | | Sbjct 1624932 CCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTG------CACTCTCATCTCA 1624985 Query 102090 ATACCCCATCAAG--AG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 | | |||| || ||| || | ||||| |||| || |||||| ||||| | Sbjct 1624986 AGCAAAGAGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGC 1625045 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAAT-TAGTGGGAATGAACTGCAAGTTGATG 102205 |||| || || || | | ||||| || | | | || ||||||| || ||||| Sbjct 1625046 AAGATTTCCTGACGGAGGCTCTGCC-GTGCGCTCTTCTCGGCATGAACTCCACACTGATG 1625104 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAAT-GGGACTAGAAAAGCA 102264 | || ||||| ||||| || || || || ||||||| | |||| | |||||| Sbjct 1625105 AAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAAT-GAAAAGGT 1625163 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324 || || | || || || || ||||| ||||| ||||| | |||||||| Sbjct 1625164 GTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 1625223 Query 102325 CTTTTTTGAAAAGAGAGT 102342 ||||||||| ||| |||| Sbjct 1625224 CTTTTTTGAGAAGCGAGT 1625241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578307108795