Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 7e-21
>seq1
Length=2302571
Score = 116 bits (128), Expect = 7e-21
Identities = 293/438 (67%), Gaps = 13/438 (3%)
Strand=Plus/Plus
Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969
||| | | |||||||| || || || || || |||||||| |||||||||||||| ||||
Sbjct 1624812 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCA 1624871
Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029
| || ||| ||||||| | || | |||| || || |||| ||| || || |||| |
Sbjct 1624872 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATAT 1624931
Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG 102089
| | ||||| ||| | || ||||||||||||| ||||| | | | |
Sbjct 1624932 CCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTG------CACTCTCATCTCA 1624985
Query 102090 ATACCCCATCAAG--AG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146
| | |||| || ||| || | ||||| |||| || |||||| ||||| |
Sbjct 1624986 AGCAAAGAGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGC 1625045
Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAAT-TAGTGGGAATGAACTGCAAGTTGATG 102205
|||| || || || | | ||||| || | | | || ||||||| || |||||
Sbjct 1625046 AAGATTTCCTGACGGAGGCTCTGCC-GTGCGCTCTTCTCGGCATGAACTCCACACTGATG 1625104
Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAAT-GGGACTAGAAAAGCA 102264
| || ||||| ||||| || || || || ||||||| | |||| | ||||||
Sbjct 1625105 AAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAAT-GAAAAGGT 1625163
Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324
|| || | || || || || ||||| ||||| ||||| | ||||||||
Sbjct 1625164 GTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 1625223
Query 102325 CTTTTTTGAAAAGAGAGT 102342
||||||||| ||| ||||
Sbjct 1625224 CTTTTTTGAGAAGCGAGT 1625241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989578307108795
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |