Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq23 145 7e-30 >seq23 Length=560556 Score = 145 bits (160), Expect = 7e-30 Identities = 272/391 (70%), Gaps = 8/391 (2%) Strand=Plus/Minus Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||| ||||| | |||| ||||| ||||| || || ||||| | |||||| | Sbjct 480183 CACGTAGAACTG-CGCAAACACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCG 480125 Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCA 21228 ||||||||||| ||| | ||| | || |||| |||| | || | || | | Sbjct 480124 CGTTCCACGCGCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGA 480065 Query 21229 CGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288 ||| |||||||| ||||||| ||| ||||| | | ||| || |||||| | Sbjct 480064 CGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTG 480005 Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348 | ||||| || | ||||||||| ||||| || || || || |||||||| ||||| | Sbjct 480004 CGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCG 479945 Query 21349 CGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCG 21407 | |||| | || | | | || |||| ||||||| ||||||| || || |||||| Sbjct 479944 TCAGGCCCAG-GCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCG 479886 Query 21408 -CGGCGC-GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCA 21465 || ||| || || || |||||||||| |||| ||| |||||||||| ||| | | Sbjct 479885 ACGTCGCTGAGAGCCCG--GGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGA 479828 Query 21466 CGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496 ||||| | | | |||||||| || ||||| Sbjct 479827 CGACGGCGCGCAGAAACACCCGCTTCGTGGT 479797 Score = 100 bits (110), Expect = 2e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGG-TCAGGCCCGTGACGT 21003 ||| ||||| ||||| |||| | ||| | | || ||||| ||||| | |||| Sbjct 480441 GTAGACGTGCGCGTCGCCCATGACGTGGGTCAGG-CTGCCGGGTATCAGGTCGCACACGT 480383 Query 21004 GAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCA 21063 | || | || | ||| ||||| ||||||||||| ||||| ||||| || ||||| |||| Sbjct 480382 GCGCCACCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAACGGCACGCCGAGACCCA 480323 Query 21064 TGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| ||||| |||||||||||||||| Sbjct 480322 TGTCGCAGGACCGCTGGTACAGCTGGCAG 480294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427773659129520