Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq23 145 7e-30
>seq23
Length=560556
Score = 145 bits (160), Expect = 7e-30
Identities = 272/391 (70%), Gaps = 8/391 (2%)
Strand=Plus/Minus
Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
|||||| ||||| | |||| ||||| ||||| || || ||||| | |||||| |
Sbjct 480183 CACGTAGAACTG-CGCAAACACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCG 480125
Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCA 21228
||||||||||| ||| | ||| | || |||| |||| | || | || | |
Sbjct 480124 CGTTCCACGCGCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGA 480065
Query 21229 CGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288
||| |||||||| ||||||| ||| ||||| | | ||| || |||||| |
Sbjct 480064 CGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTG 480005
Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348
| ||||| || | ||||||||| ||||| || || || || |||||||| ||||| |
Sbjct 480004 CGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCG 479945
Query 21349 CGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCG 21407
| |||| | || | | | || |||| ||||||| ||||||| || || ||||||
Sbjct 479944 TCAGGCCCAG-GCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCG 479886
Query 21408 -CGGCGC-GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCA 21465
|| ||| || || || |||||||||| |||| ||| |||||||||| ||| | |
Sbjct 479885 ACGTCGCTGAGAGCCCG--GGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGA 479828
Query 21466 CGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496
||||| | | | |||||||| || |||||
Sbjct 479827 CGACGGCGCGCAGAAACACCCGCTTCGTGGT 479797
Score = 100 bits (110), Expect = 2e-16
Identities = 113/149 (76%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGG-TCAGGCCCGTGACGT 21003
||| ||||| ||||| |||| | ||| | | || ||||| ||||| | ||||
Sbjct 480441 GTAGACGTGCGCGTCGCCCATGACGTGGGTCAGG-CTGCCGGGTATCAGGTCGCACACGT 480383
Query 21004 GAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCA 21063
| || | || | ||| ||||| ||||||||||| ||||| ||||| || ||||| ||||
Sbjct 480382 GCGCCACCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAACGGCACGCCGAGACCCA 480323
Query 21064 TGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||| ||||| ||||||||||||||||
Sbjct 480322 TGTCGCAGGACCGCTGGTACAGCTGGCAG 480294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427773659129520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |