Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1 93.3 6e-14
>seq1
Length=2302571
Score = 93.3 bits (102), Expect = 6e-14
Identities = 220/332 (66%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241
||||| |||||||| ||||| || ||| | || || | ||| || ||||||
Sbjct 1624674 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTGATATACGTGTCGATC 1624615
Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301
|| | | |||| | || ||||| || || || || ||||| || |||||||||||
Sbjct 1624614 AATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAA 1624555
Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361
| || || | || |||||| || | || || ||| | | ||||| || || ||
Sbjct 1624554 CGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATG 1624495
Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421
|| || ||| ||||| || ||||| | || || |||| ||||| | | |
Sbjct 1624494 CCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTC 1624435
Query 50422 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478
| | |||||||| || | | ||| || || | |||| ||||| ||||||| ||
Sbjct 1624434 AGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAA 1624375
Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGAT 50510
|| ||||| ||||| || ||||| | ||| ||
Sbjct 1624374 GAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718264768716360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |