Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 149 8e-31 seq1 100 4e-16 >seq2 Length=1075658 Score = 149 bits (164), Expect = 8e-31 Identities = 444/679 (65%), Gaps = 16/679 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| ||||| || || ||||| | | ||| || |||| | | || || ||||| Sbjct 441936 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 441995 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || || ||||| || || | || || || | | | ||||| || || Sbjct 441996 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 442055 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||| | ||||| ||||| | | | ||| | ||||| || |||| ||| ||| Sbjct 442056 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 442115 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | ||||| || ||||| || || || || | |||||| || ||||| || | Sbjct 442116 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 442175 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| || ||| |||| | || || || | || ||||| |||| || ||| ||| Sbjct 442176 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 442235 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 | |||||||| | | || || || || || ||||||||||| || | ||| Sbjct 442236 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 442295 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || || | || || ||||||||||| || || || ||| |||||| | || || Sbjct 442296 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 442355 Query 72394 CAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || | || | | |||| || || ||||| || || | |||||| || ||||| Sbjct 442356 CA-CGAGGAA--AGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGG 442412 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTC----AATAGCTGATTCTATATC-CC 72505 || || |||| |||| || ||||| || || | ||| | | | | || || Sbjct 442413 GTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCC 442471 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 |||| || || || |||||||| | ||| |||||||||| ||| || |||||| Sbjct 442472 CCAGATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGC 442527 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 | | |||| | || ||| |||| || || |||||||| || | || | Sbjct 442528 CGTCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGA 442587 Query 72626 AGTCTCGTTCGTAAATAAT 72644 |||||| ||||||| ||| Sbjct 442588 AGTCTCTCTCGTAAACAAT 442606 >seq1 Length=2302571 Score = 100 bits (110), Expect = 4e-16 Identities = 223/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 ||||| |||||||| ||||| || ||| | || || | ||| || |||||| Sbjct 1624674 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTGATATACGTGTCGATC 1624615 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 || | | |||| | || ||||| || || || || ||||| || ||||||||||| Sbjct 1624614 AATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAA 1624555 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466 | ||| || | |||||| || || | || || ||| | | |||||||| || || Sbjct 1624554 CGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATG 1624495 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526 || || ||| ||||| || ||||| | || || ||||| ||||| | || ||| Sbjct 1624494 CCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCAT-CGTCGTT 1624436 Query 42527 AA----TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 | |||||||| || | | ||| || || | |||| ||||| | ||||| || Sbjct 1624435 CAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAA 1624376 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 || || || ||||| || ||||| | ||| || Sbjct 1624375 AGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135433231240